View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0419_low_9 (Length: 357)
Name: NF0419_low_9
Description: NF0419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0419_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 5974929 - 5975145
Alignment:
| Q |
30 |
aatcacacccaaacaccattttgttaatatatgatgaaaatgagtttgcattcaaacatagaaagtcacaattaaatggcaaggaccgttaggaaataaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5974929 |
aatcacacccaaacaccattttgttaatatataatgaaaacgagtttgcattcaagcatg--aagtcacaattaaatggcaaggactgttaggaaataaa |
5975026 |
T |
|
| Q |
130 |
ttgttgtttgcagagaagtttgagaacctagcagactgaaacatacagaacttgatatttacgaactaacaaatgcttagttagatgcatttgttgcagc |
229 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5975027 |
ttgttgtttgctgagaagtttgagaacctagcagactgaaacatacagaacctgatatttagaaactaacaaatgcttagttagatgcatttgttgcagc |
5975126 |
T |
|
| Q |
230 |
agaaggcactagtgtcgta |
248 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5975127 |
agaaggcactagtgtcgta |
5975145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 5975202 - 5975244
Alignment:
| Q |
305 |
attcttcttctgaaaatctcgttattatgtatgtgtcttcatc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5975202 |
attcttcttctgaaaatctcgttattatgtacgtgtcttcatc |
5975244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 26538225 - 26538430
Alignment:
| Q |
34 |
acacccaaacaccattttgttaatatatgatgaaaatgagtttgcattcaaacatagaaagtcacaattaaatggcaaggaccgttaggaaataaattgt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
26538225 |
acacccaaacaccattttgttaatatatgatgaatatgagtttgcattcaagcatggaaagtcacaattaaatggtaaggactctctggaaataaattgt |
26538324 |
T |
|
| Q |
134 |
tgtttgcagagaagtttgagaacctagcagactgaaacatacagaacttgatatttacgaactaacaaatgcttagttagatgcatttgttgcagcagaa |
233 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||| ||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26538325 |
tctttgctcggaagtttgagaacctagtagactcaaacatacaaaacctgagatttaggaactaacaaatgcttagttagatgcatttgttgcagcagaa |
26538424 |
T |
|
| Q |
234 |
ggcact |
239 |
Q |
| |
|
|||||| |
|
|
| T |
26538425 |
ggcact |
26538430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 344
Target Start/End: Original strand, 26538508 - 26538547
Alignment:
| Q |
305 |
attcttcttctgaaaatctcgttattatgtatgtgtcttc |
344 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26538508 |
attcttcttctgaaaatctcattattatgtatgtgtcttc |
26538547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 741874 - 741821
Alignment:
| Q |
186 |
atttacgaactaacaaatgcttagttagatgcatttgttgcagcagaaggcact |
239 |
Q |
| |
|
||||| |||| ||||||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
741874 |
atttaggaacaaacaaatgccaagttacatgcatttgttgcagcagaagacact |
741821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 752310 - 752257
Alignment:
| Q |
186 |
atttacgaactaacaaatgcttagttagatgcatttgttgcagcagaaggcact |
239 |
Q |
| |
|
||||| |||| ||||||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
752310 |
atttaggaacaaacaaatgccaagttacatgcatttgttgcagcagaagacact |
752257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1807 times since January 2019
Visitors: 3237