View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0420_high_3 (Length: 288)
Name: NF0420_high_3
Description: NF0420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0420_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 39223029 - 39222804
Alignment:
| Q |
30 |
ctgataactttgttgaaatagccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcatattttacaaccagcttggg |
129 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39223029 |
ctgataactttgttgaaattgccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcatattttacaaccagcttggg |
39222930 |
T |
|
| Q |
130 |
tttaggaagttttctaagtactttccttctttcaatcgtcgctaaaatcacccagagacacagtcacaaaggttgggttttggataacctaaacatctcc |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39222929 |
tttaggaagttttctaagtactttccttctttcaatcgtcgctaaaatcacccagagacatggtcacaaaggttgggttttggataacctaaacatctct |
39222830 |
T |
|
| Q |
230 |
cgtttagataattattatatgttcat |
255 |
Q |
| |
|
||||||||| |||||||||||||||| |
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| T |
39222829 |
cgtttagattattattatatgttcat |
39222804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 39193662 - 39193451
Alignment:
| Q |
44 |
gaaatagccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcatattttacaaccagcttgggtttaggaagttttc |
143 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39193662 |
gaaattgccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcatattttacaaccagcttgggtttaggaagttttc |
39193563 |
T |
|
| Q |
144 |
taagtactttccttctttcaatcgtcgctaaaatcacccagagacacagtcacaaaggttgggttttggataacctaaacatctcccgtttagataatta |
243 |
Q |
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|||||||||||||||||||| | || ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39193562 |
taagtactttccttctttcagttgttgctaatatcactcagagacatggtcacaaaggttgggttttggataacctaaacatctcccgtttagataatta |
39193463 |
T |
|
| Q |
244 |
ttatatgttcat |
255 |
Q |
| |
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|||||||||||| |
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| T |
39193462 |
ttatatgttcat |
39193451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 39176955 - 39176738
Alignment:
| Q |
30 |
ctgataactttgttgaaatagccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcatattttacaaccagcttggg |
129 |
Q |
| |
|
|||||||||| ||||| || |||||| | || |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| || |
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| T |
39176955 |
ctgataacttcgttgatattgccaagatggaaatcttctatgatcaagcaccagaaggcatgaaaagtctcggaacagcgtatttcacaaccagcttagg |
39176856 |
T |
|
| Q |
130 |
tttaggaagttttctaagtactttccttctttcaatcgtcgctaaaatcacccagagacacagtcacaaaggttgggttttggataacctaaacatctcc |
229 |
Q |
| |
|
||||||||| ||||| |||||| | ||||| || || ||||| |||||||| ||||| ||||||| || ||| | || |||||||||||| ||| |
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| T |
39176855 |
tttaggaagctttctcagtactgttcttctgtctgctgttgctaatatcacccaaagacatggtcacaagggatggatattaaataacctaaacacttcc |
39176756 |
T |
|
| Q |
230 |
cgtttagataattattat |
247 |
Q |
| |
|
||||||||| |||||||| |
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|
| T |
39176755 |
cgtttagattattattat |
39176738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 39256665 - 39256448
Alignment:
| Q |
30 |
ctgataactttgttgaaatagccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcatattttacaaccagcttggg |
129 |
Q |
| |
|
|||||| |||||||||||| || ||| | ||||| || |||||||||||||||||||||||||||||||| ||| ||||| || ||||| |||||||| |
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| T |
39256665 |
ctgatagctttgttgaaattgctaagatggagtttttttatgatcaagcaccagaaggcatgaaaagtcttggagcatcactttccacaacaagcttggg |
39256566 |
T |
|
| Q |
130 |
tttaggaagttttctaagtactttccttctttcaatcgtcgctaaaatcacccagagacacagtcacaaaggttgggttttggataacctaaacatctcc |
229 |
Q |
| |
|
||| ||| ||||| | ||| | ||| |||| |||| || ||| | ||||| || ||||| |||||||||||||| ||||| |||| ||||||||||| |
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| T |
39256565 |
tttgggaggttttgttagtgccttcattctgtcaactgttgctgatatcactcaaagacatggtcacaaaggttggattttgaataatctaaacatctct |
39256466 |
T |
|
| Q |
230 |
cgtttagataattattat |
247 |
Q |
| |
|
||||||||| | |||||| |
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|
| T |
39256465 |
cgtttagattactattat |
39256448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 39238696 - 39238620
Alignment:
| Q |
30 |
ctgataactttgttgaaatagccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaaca |
106 |
Q |
| |
|
|||||||||| || ||| | |||||| | ||||||||||| |||||||| |||||| |||||| |||||||||||| |
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|
| T |
39238696 |
ctgataacttcgtcgaagttgccaagatggagttcttctacgatcaagcgccagaaaccatgaagagtctcggaaca |
39238620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 39244486 - 39244412
Alignment:
| Q |
38 |
tttgttgaaatagccaagttagagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcatat |
112 |
Q |
| |
|
||||| ||||| || ||| ||||||||||||||||||||||||| ||| |||||||| || ||| |||||||| |
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|
| T |
39244486 |
tttgtggaaattgctaagatagagttcttctatgatcaagcacctgaatctatgaaaagccttggatcatcatat |
39244412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 15755800 - 15755854
Alignment:
| Q |
59 |
gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcatatt |
113 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
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|
| T |
15755800 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatatt |
15755854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 15766669 - 15766721
Alignment:
| Q |
59 |
gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata |
111 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| || || ||||||||||| |
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|
| T |
15766669 |
gagtttttctatgatcaagcaccagaaagcatgaagagccttggaacatcata |
15766721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 15737706 - 15737811
Alignment:
| Q |
59 |
gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcatattttacaaccagcttgggtttaggaagttttctaagtactttccttc |
158 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| ||||| || || || |||| || ||||| ||| | ||||||||| |||||||||| |||| |
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| T |
15737706 |
gagttcttctatgatcaagctccagaaagcatgaagagtcttggcacttcttattcattgactagcttaggtattggaagttttataagtacttttcttc |
15737805 |
T |
|
| Q |
159 |
tttcaa |
164 |
Q |
| |
|
| |||| |
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|
| T |
15737806 |
tatcaa |
15737811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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