View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0420_low_6 (Length: 295)
Name: NF0420_low_6
Description: NF0420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0420_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 37715000 - 37714733
Alignment:
| Q |
1 |
tatagtcattattatcttaacatgtacggtggtgtttgcttatatacggagaaagaaaattggccacaagcttggtaataatttatggtttgacatttta |
100 |
Q |
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| T |
37715000 |
tatagtcattattatcttaacatgtacggtggtgtttgcttatatacggagaaagaaaattggccacaagcttggtaataatttatggtttgacatttta |
37714901 |
T |
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| Q |
101 |
aatttaaagtgtttcattgcatcaaaatacatttaatgtaagcaaagttattataannnnnnnnnnnnnnnnggtcagaaagttattataacttatactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37714900 |
aatttaaagtgtttcattgcatcaaaatacatttaatgtaagcaaagttattataattattattatttttttggtcagaaagttattataacttatactt |
37714801 |
T |
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| Q |
201 |
ctctttactgagttcagataaggtgagcattcaaattcaggagagcttgcacgacagtgaaaagcatg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37714800 |
ctctttactgagttcagataaggtgagcattcaaattcaggagagcttgcacgacagtgaaaagcatg |
37714733 |
T |
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