View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0422_low_1 (Length: 405)

Name: NF0422_low_1
Description: NF0422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0422_low_1
NF0422_low_1
[»] chr7 (10 HSPs)
chr7 (222-394)||(45277262-45277444)
chr7 (222-394)||(21715657-21715839)
chr7 (227-394)||(31392657-31392833)
chr7 (223-394)||(8230605-8230796)
chr7 (223-394)||(40029312-40029503)
chr7 (223-394)||(32881694-32881884)
chr7 (66-127)||(21715498-21715559)
chr7 (223-276)||(4675207-4675260)
chr7 (66-106)||(8230436-8230476)
chr7 (66-106)||(45277559-45277599)
[»] chr1 (14 HSPs)
chr1 (222-394)||(33258716-33258898)
chr1 (223-394)||(28919660-28919851)
chr1 (223-394)||(19057143-19057334)
chr1 (223-394)||(36145930-36146121)
chr1 (222-394)||(33278888-33279057)
chr1 (223-394)||(7654272-7654463)
chr1 (305-384)||(24086192-24086271)
chr1 (66-106)||(33259013-33259053)
chr1 (66-106)||(33279172-33279212)
chr1 (66-127)||(19057443-19057500)
chr1 (66-106)||(7654103-7654143)
chr1 (66-106)||(24085821-24085861)
chr1 (66-106)||(28919494-28919534)
chr1 (66-106)||(36145761-36145801)
[»] chr8 (4 HSPs)
chr8 (222-394)||(25265197-25265379)
chr8 (223-394)||(33294439-33294630)
chr8 (66-127)||(25265477-25265538)
chr8 (66-106)||(33294290-33294330)
[»] chr5 (5 HSPs)
chr5 (223-394)||(30333022-30333213)
chr5 (223-394)||(1418268-1418459)
chr5 (223-394)||(25915554-25915745)
chr5 (66-106)||(1418588-1418628)
chr5 (66-106)||(25915874-25915914)
[»] chr2 (2 HSPs)
chr2 (223-394)||(1840760-1840951)
chr2 (66-106)||(1840594-1840634)
[»] chr4 (9 HSPs)
chr4 (223-394)||(19995068-19995259)
chr4 (223-394)||(44252465-44252656)
chr4 (223-394)||(55947945-55948136)
chr4 (276-394)||(53355953-53356071)
chr4 (223-276)||(39654216-39654269)
chr4 (305-393)||(39654047-39654137)
chr4 (66-106)||(19994900-19994940)
chr4 (66-127)||(44252768-44252825)
chr4 (66-106)||(55947776-55947816)
[»] chr3 (4 HSPs)
chr3 (223-394)||(33733529-33733720)
chr3 (223-394)||(53528834-53529025)
chr3 (66-106)||(33733360-33733400)
chr3 (66-106)||(53529154-53529194)
[»] scaffold0489 (2 HSPs)
scaffold0489 (223-394)||(5901-6089)
scaffold0489 (66-106)||(5733-5773)
[»] chr6 (1 HSPs)
chr6 (223-393)||(19083170-19083357)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 222 - 394
Target Start/End: Complemental strand, 45277444 - 45277262
Alignment:
Q  222 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaataa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  45277444 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaacgtgcaatccaatttcacacactttaaaataa 45277345  T
Q  312 aacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45277344 aacttatctcaattcaacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 45277262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 222 - 394
Target Start/End: Original strand, 21715657 - 21715839
Alignment:
Q  222 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaataa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| ||||||||||||||||||||||    
T  21715657 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaacgtgcaatctaatttcacacactttaaaataa 21715756  T
Q  312 aacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21715757 aacttatctcaattcaacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 21715839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 227 - 394
Target Start/End: Original strand, 31392657 - 31392833
Alignment:
Q  227 cttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaataaaactt 316  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||          ||| ||||||||||||||||||||||| ||||||||||||    
T  31392657 cttctcttttatttcttctcacaaataacaaaatcaaattaaaccaatatacccactgttcaatgtgcaatccaatttcacacactt-aaaataaaactt 31392755  T
Q  317 atctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  31392756 atctcaattcaacattccaacatatttttcaattctatttattatccctctaaatcttcaaatgaaaagaatattcat 31392833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 8230605 - 8230796
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| |||||||||||||||||||||||||           
T  8230605 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaatgtgcaatccaatttcacacactttaaaatcgt 8230704  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  8230705 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccctgtagatcttcaaatgaaaagaatattcat 8230796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 40029503 - 40029312
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaat--- 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||          ||||||||||| |||||||||||||||||||||       
T  40029503 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaatcagtatactcactgttcaacgtgcaattcaatttcacacactttaaaatcgt 40029404  T
Q  310 -------aaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  40029403 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccatctagatcttcaaatgaaaagaatattcat 40029312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 32881694 - 32881884
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||          ||||||||||||||||| |||||||||||           
T  32881694 ataacttctcttttatttcttgtcacaaacaacaaaatcaaattaaatcaatatacccactgttcaacgtgcaatccaatt-cacacactttaaaatcgt 32881792  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  32881793 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccctgtagatcttcaaatgaaaagaatattcat 32881884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 21715498 - 21715559
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactatatatcattgttttcataaact 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21715498 atttcttcatctttttcccacatcttcttctttattactatatatcattgtcttcataaact 21715559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 4675260 - 4675207
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat 276  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  4675260 ataacttcacttttgtttcttctcacaaacaacaaaattaaattaaaccaatat 4675207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 8230436 - 8230476
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  8230436 atttcttcatcttcttcccacatcttcttcttcattactat 8230476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 45277599 - 45277559
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  45277599 atttcatcatctttttcccacatcttcttcttcattactat 45277559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 222 - 394
Target Start/End: Complemental strand, 33258898 - 33258716
Alignment:
Q  222 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaataa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  33258898 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaacgtgcaatccaatttcacacactttaaaataa 33258799  T
Q  312 aacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258798 aacttatctcaattcaacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 33258716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 28919660 - 28919851
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||           
T  28919660 ataatttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaacgtgcaatccaatttcacacactttaaaatcgt 28919759  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  28919760 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccctttagatcttcaaatgaaaagaatattcat 28919851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 19057334 - 19057143
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaata----------tcaacgtgcaatccaatttcacacactttaaaat--- 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||       
T  19057334 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaataaacccattgttcaacgtgcaatccaatttcacacactttaaaatcgt 19057235  T
Q  310 -------aaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  19057234 ttaaaataaaacttatctctattcaacattccaacatatttttcaattctatttattatccctctaaattttcaaatgaaaagaatattcat 19057143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 36145930 - 36146121
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||           
T  36145930 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatactcactgttcaacgtgcaatccaatttcacacactttaaaatcgt 36146029  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  36146030 ttaaaataaaacttatctccattcaacattccaacatatttttcaattctatttattatccctctaaatattcaaatgaaaagaatattcat 36146121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 222 - 394
Target Start/End: Complemental strand, 33279057 - 33278888
Alignment:
Q  222 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaataa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  33279057 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaacgtgcaatccaatttcacacactttaaaataa 33278958  T
Q  312 aacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
    ||||||||||||||| ||||||||||||             ||||||||||||||||||||||||||||||||||||||||||    
T  33278957 aacttatctcaattcaacattccaacat-------------atttattatccctctagaacttcaaatgaaaagaatattcat 33278888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 7654272 - 7654463
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||           
T  7654272 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatactcactattcaacgtgcaatccaatttcacacactttaaaatcat 7654371  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||| ||||||||    
T  7654372 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccttctaaatattcaaatgaaaaggatattcat 7654463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 24086192 - 24086271
Alignment:
Q  305 aaaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaa 384  Q
    ||||||||||| |||||||||| |||||||||||| ||||| ||||| ||||||||||  |||||| |||| ||||||||    
T  24086192 aaaataaaactcatctcaattcaacattccaacatgtttttaaattccatttattatcattctagatcttcgaatgaaaa 24086271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 33259053 - 33259013
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  33259053 atttcttcatctttttcccacatcttcttcttcattactat 33259013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 33279212 - 33279172
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  33279212 atttcttcatctttttcccacatcttcttcttcattactat 33279172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 19057500 - 19057443
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactatatatcattgttttcataaact 127  Q
    ||||||||||||| ||||||||| |||||||| |||||    ||||||||||||||||||||    
T  19057500 atttcttcatcttcttcccacattttcttcttcattac----tatcattgttttcataaact 19057443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 7654103 - 7654143
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  7654103 atttcttcatcttcttcccacattttcttcttcattactat 7654143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 24085821 - 24085861
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| |||||||||||||||||| || |||||    
T  24085821 atttcttcatcttcttcccacatcttcttcttcatcactat 24085861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 28919494 - 28919534
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| |||| ||||||||||||| ||||||||    
T  28919494 atttcttcatcttcttccgacatcttcttcttcattactat 28919534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 36145761 - 36145801
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  36145761 atttcttcatcttcttcccacattttcttcttcattactat 36145801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 222 - 394
Target Start/End: Complemental strand, 25265379 - 25265197
Alignment:
Q  222 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaataa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| ||||||||||||||||||||||    
T  25265379 tataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaacgtgcaatctaatttcacacactttaaaataa 25265280  T
Q  312 aacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25265279 aacttatctcaattcaacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 25265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 33294439 - 33294630
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||| ||||||||||||||| ||||||||           
T  33294439 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaacatgcaatccaatttcatacactttaaaatcgt 33294538  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33294539 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccctctagatcttcaaatgaaaagaatattcat 33294630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 25265538 - 25265477
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactatatatcattgttttcataaact 127  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  25265538 atttcttcatcttttttccacatcttcttctttattactatatatcattgtcttcataaact 25265477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 33294290 - 33294330
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  33294290 atttcttcatcttcttcccacatcttcttcttcattactat 33294330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 30333022 - 30333213
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||           
T  30333022 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactattcaacgtgcaatccaatttcacacactttaaaatcgt 30333121  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30333122 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccctctagatcttcaaatgaaaagaatattcat 30333213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 1418459 - 1418268
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaat--- 309  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||||||||| |||||||||||||||||||       
T  1418459 ataacttctcttttatttcttctcacaaataacaaaatcaaattaaaccaatatacccactgttcaacgtgcaatcctatttcacacactttaaaatcgt 1418360  T
Q  310 -------aaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  1418359 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccttctagatcttcaaatgaaaagaatattcat 1418268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 25915745 - 25915554
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatc----------aacgtgcaatccaatttcacacactttaaaat--- 309  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||           ||||||||||||||||||||||||||||||||       
T  25915745 ataacttctcttttatttcttctcacaaacagcaaaatcaaattaaaccaatatacccattgtttaacgtgcaatccaatttcacacactttaaaatcgt 25915646  T
Q  310 -------aaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||    
T  25915645 ttaaaataaaacttatctcaattcgacattccaacatatttttcaattctatttattatccctctaaatcttcaaattaaaataatattcat 25915554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 1418628 - 1418588
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  1418628 atttcttcatcttcttcccacatcttcttcttcattactat 1418588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 25915914 - 25915874
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  25915914 atttcttcatcttcttcccacattttcttcttcattactat 25915874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 1840760 - 1840951
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||           
T  1840760 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatatccactgttcaacgtgcaatccaatttcacacactttaaaatcgt 1840859  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1840860 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccctctagatcttcaaatgaaaagaatattcat 1840951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 1840594 - 1840634
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  1840594 atttcttcatcttcttcccacatcttcttcttcattactat 1840634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 19995068 - 19995259
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||| ||||||||||||||||||||||||           
T  19995068 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaacatgcaatccaatttcacacactttaaaatcgt 19995167  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19995168 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccctctagatcttcaaatgaaaagaatattcat 19995259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 44252656 - 44252465
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaat--- 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||       
T  44252656 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatacccactgttcaacgtgcaatccaatttcacacactttaaaatcgt 44252557  T
Q  310 -------aaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  44252556 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatcccactaaatcttcaaatgaaaagaatattcat 44252465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 55947945 - 55948136
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaa----- 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||         
T  55947945 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatattcactgttcaacgtgcaatccaatttcacacactttaaaatcgt 55948044  T
Q  308 -----ataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
         ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  55948045 ctaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccctctaaatattcaaatgaaaagaatattcat 55948136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 276 - 394
Target Start/End: Complemental strand, 53356071 - 53355953
Alignment:
Q  276 tcaacgtgcaatccaatttcacacactttaaaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttc 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53356071 tcaacgtgcaatccaatttcacacactttaaaataaaacttatctcaattcaacattccaacatatttttcaattatatttattatccctctagaacttc 53355972  T
Q  376 aaatgaaaagaatattcat 394  Q
    |  ||||||||||||||||    
T  53355971 atgtgaaaagaatattcat 53355953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 39654269 - 39654216
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat 276  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  39654269 ataaattcccttttatttcttcgcacaaacaacaaaatcaaattaaaccaatat 39654216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 39654137 - 39654047
Alignment:
Q  305 aaaataaaacttatctcaattccacattccaaca--tatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattca 393  Q
    ||||||||||| |||||||||| |||||||||||  | ||||||||||| ||||||||||| || ||| |||||||| |||| || |||||    
T  39654137 aaaataaaactcatctcaattcaacattccaacatttttttttcaattccatttattatccttcaagatcttcaaataaaaataacattca 39654047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 19994900 - 19994940
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  19994900 atttcttcatcttcttcccacatcttcttcttcattactat 19994940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 44252825 - 44252768
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactatatatcattgttttcataaact 127  Q
    ||||||||||||| ||||||||| |||||||| |||||    ||||||||||||||||||||    
T  44252825 atttcttcatcttcttcccacattttcttcttcattac----tatcattgttttcataaact 44252768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 55947776 - 55947816
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  55947776 atttcttcatcttcttcccacattttcttcttcattactat 55947816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 33733529 - 33733720
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||          |||| ||||||||||||||||||||||||           
T  33733529 ataacttctcttttatttcttctcacaaacaacaaaattaaattaaaccaatatacccactgttcaacatgcaatccaatttcacacactttaaaatcgt 33733628  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33733629 ttaaaataaaacttatctcaattcaacattccaacatatttttcaattctatttattatccctctagatcttcaaatgaaaagaatattcat 33733720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 53529025 - 53528834
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacactttaaaat--- 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||       
T  53529025 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatatactcaccgttcaacgtgcaatccaatttcacacactttaaaatcgt 53528926  T
Q  310 -------aaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  53528925 ttaaaataaaacttatctcaattcaacattccaacatacttttcaattctatttattatccctctaaatattcaaatgaaaagaatattcat 53528834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 33733360 - 33733400
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  33733360 atttcttcatcttcttcccacatcttcttcttcattactat 33733400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 53529194 - 53529154
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  53529194 atttcttcatcttcttcccacattttcttcttcattactat 53529154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 5901 - 6089
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||          ||||||||||||| |||||||||||||||           
T  5901 ataacttctcttttatttcttctcacaaacaacaaaat---attaaaccaatatacccactgttcaacgtgcaatcctatttcacacactttaaaatcgt 5997  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattcat 394  Q
       ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5998 ttaaaataaaacttatctcaattcaacattctaacatatttttcaattctatttattatccctctagatcttcaaatgaaaagaatattcat 6089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 5733 - 5773
Alignment:
Q  66 atttcttcatctttttcccacatcttcttctttattactat 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  5733 atttcttcatcttcttcccacatcttcttcttcattactat 5773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 223 - 393
Target Start/End: Original strand, 19083170 - 19083357
Alignment:
Q  223 ataacttctcttttatttcttctcacaaacaacaaaatcaaattaaaccaatat----------caacgtgcaatccaatttcacacacttta------- 305  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||          ||||||||||||| |||||||||||||||           
T  19083170 ataacttctcttttatttcttctcacaaacaacaaaat---attaaaccaatatacccactgttcaacgtgcaatcctatttcacacactttaaaatcgt 19083266  T
Q  306 ---aaataaaacttatctcaattccacattccaacatatttttcaattctatttattatccctctagaacttcaaatgaaaagaatattca 393  Q
       ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  19083267 ttaaaataaaacttatctcaattcaacattctaacatatttttcaattctatttattatccctctagatcttcaagtgaaaagaatattca 19083357  T

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