View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0422_low_9 (Length: 253)

Name: NF0422_low_9
Description: NF0422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0422_low_9
NF0422_low_9
[»] chr5 (8 HSPs)
chr5 (32-146)||(25514158-25514272)
chr5 (32-146)||(25521088-25521202)
chr5 (139-243)||(8773107-8773211)
chr5 (139-231)||(25517578-25517670)
chr5 (34-119)||(42800093-42800178)
chr5 (34-119)||(42803222-42803307)
chr5 (32-102)||(8763839-8763909)
chr5 (32-102)||(8776671-8776741)
[»] chr2 (1 HSPs)
chr2 (139-243)||(7557490-7557594)
[»] chr1 (2 HSPs)
chr1 (139-238)||(19721217-19721316)
chr1 (34-145)||(7387520-7387633)
[»] chr3 (1 HSPs)
chr3 (34-146)||(27906930-27907040)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 25514158 - 25514272
Alignment:
Q  32 actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatccgaacagtagctt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25514158 actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaaagacattacttttttgtcatgtttgaatccgaacagtagctt 25514257  T
Q  132 tctgtttataaatta 146  Q
    |||||||||||||||    
T  25514258 tctgtttataaatta 25514272  T

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Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 25521202 - 25521088
Alignment:
Q  32 actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatccgaacagtagctt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25521202 actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaaagacattacttttttgtcatgtttgaatccgaacagtagctt 25521103  T
Q  132 tctgtttataaatta 146  Q
    |||||||||||||||    
T  25521102 tctgtttataaatta 25521088  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 8773107 - 8773211
Alignment:
Q  139 ataaattaccgaacaacgccttgcggtttgacttgtacttttgcagcttgaacagtgtctgacactttttgttgcgttcttcttcttctttggcgcacct 238  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8773107 ataaattaccgaacaatgccttgcggtatgacttgtacttttgcatcttgaacagtgtctgacactttttgttgcgttcttcttcttctttggagcacct 8773206  T
Q  239 atgct 243  Q
     ||||    
T  8773207 ttgct 8773211  T

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Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 25517670 - 25517578
Alignment:
Q  139 ataaattaccgaacaacgccttgcggtttgacttgtacttttgcagcttgaacagtgtctgacactttttgttgcgttcttcttcttctttgg 231  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25517670 ataaattaccgaacaatgccttgcggtatgacttgtacttttgcatcttgaacagtgtctgacactttttgttgcgttcttcttcttctttgg 25517578  T

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Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 42800178 - 42800093
Alignment:
Q  34 taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatcc 119  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  42800178 taattctgtgtggccgatcgaaaataaacttaaatatatgtgttttgagttccaaaagacaatacttttttgtcatgtttgaatcc 42800093  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 42803307 - 42803222
Alignment:
Q  34 taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatcc 119  Q
    |||||||||||||||||| |||||||| | |||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||    
T  42803307 taattctgtgtggccgattgaaagtgaccctaaatatatgtgttttgagttctaaaagacattacttttttgtcaagtttgaatcc 42803222  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 8763839 - 8763909
Alignment:
Q  32 actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattactttt 102  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  8763839 actaattttgtgcggccgatcgaaagtgaacttaaatatatgcgttttgagttccaaaagacattactttt 8763909  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 8776741 - 8776671
Alignment:
Q  32 actaattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattactttt 102  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  8776741 actaattttgtgcggccgatcgaaagtgaacttaaatatatgcgttttgagttccaaaagacattactttt 8776671  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 7557594 - 7557490
Alignment:
Q  139 ataaattaccgaacaacgccttgcggtttgacttgtacttttgcagcttgaacagtgtctgacactttttgttgcgttcttcttcttctttggcgcacct 238  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  7557594 ataaattaccgaacaatgccttgcggtatgacttgtacttttgcatcttgaacagtgtctgacactttttgctgcgttcttcttcttctttggagcacct 7557495  T
Q  239 atgct 243  Q
     ||||    
T  7557494 ttgct 7557490  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 19721316 - 19721217
Alignment:
Q  139 ataaattaccgaacaacgccttgcggtttgacttgtacttttgcagcttgaacagtgtctgacactttttgttgcgttcttcttcttctttggcgcacct 238  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19721316 ataaattaccgaacaattccttgcggtatgacttgtacttttgcatcttgaacagtgtctgacactttttgttgcgttcttcttcttctttggagcacct 19721217  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 7387520 - 7387633
Alignment:
Q  34 taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattac-ttttttgtcat-gtttgaatccgaacagtagctt 131  Q
    ||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||| |||| |||||||    
T  7387520 taattctctgtgccctatcgaaaatgaacttaaatatatgtgttttgagttccaaaacacattactttttttgtcatagtttgaatctgaaccgtagctt 7387619  T
Q  132 tctgtttataaatt 145  Q
    || |||||| ||||    
T  7387620 tccgtttatgaatt 7387633  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 27907040 - 27906930
Alignment:
Q  34 taattctgtgtggccgatcgaaagtgaacttaaatatatgtgttttgagttccaaatgacattacttttttgtcatgtttgaatccgaacagtagctttc 133  Q
    ||||||| |||||||||||| || |||||||||||||  ||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||||    
T  27907040 taattctctgtggccgatcgtaaatgaacttaaatat--gtgttttgagttccaaaagacattactttcttgtcatgtttgaatctgaaccgtagctttc 27906943  T
Q  134 tgtttataaatta 146  Q
     |||||| |||||    
T  27906942 cgtttatgaatta 27906930  T

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