View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0423_high_5 (Length: 224)
Name: NF0423_high_5
Description: NF0423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0423_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 28380043 - 28379941
Alignment:
| Q |
4 |
gtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttca |
103 |
Q |
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| T |
28380043 |
gtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttca |
28379944 |
T |
|
| Q |
104 |
tct |
106 |
Q |
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||| |
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| T |
28379943 |
tct |
28379941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 28414981 - 28415083
Alignment:
| Q |
4 |
gtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttca |
103 |
Q |
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||||||| |||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
28414981 |
gtattctgagaacaagcacatagcaagaaacagaacttcacaatcattccaaaccaccaaaagaagataacattattgttcttcatactcaacacgttca |
28415080 |
T |
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| Q |
104 |
tct |
106 |
Q |
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||| |
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| T |
28415081 |
tct |
28415083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 28389682 - 28389583
Alignment:
| Q |
7 |
ttctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttcatct |
106 |
Q |
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||||||| |||| |||| | ||||||||| || | || ||||||||| ||||||||| | |||||||||| ||||||||||||||||||| ||||||| |
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| T |
28389682 |
ttctcagcacaaacacataacaagaaacagaattgcacaatcattccaaaccaccaatataagataacatgtttgttcttcttactcaacactttcatct |
28389583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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