View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0423_low_1 (Length: 623)
Name: NF0423_low_1
Description: NF0423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0423_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 60 - 528
Target Start/End: Original strand, 2517821 - 2518290
Alignment:
| Q |
60 |
gaatacccaaaattttgatcttattttcagcaggatctaagaaatggaatactcattgaacaatgaggaaatgagaaagacattgaattcaaaccatgtg |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517821 |
gaatacccaaaattttgatcttattttcagcaggatctaagaaatggaatactcattgaacaatgaggaaatgagaaagacattgaattcaaaccatgtg |
2517920 |
T |
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| Q |
160 |
cccatggccaggagaggtcttggatccgagggagccaagatacaactcttagcgaaccattttcgagttggcctgagcaagaatgacggctacttctatc |
259 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517921 |
cccatggccaggagaggtcttggatccaagggagccaagatacaactcttagcgaaccattttcgagttggcctgagcaagaatgacggctacttctatc |
2518020 |
T |
|
| Q |
260 |
actacaatgtatgttcttctcattctcaaaatatatcatgtttcgttgtg-atgtgcatatgtgaaaaacatacctattcatgatttctaacatcataaa |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2518021 |
actacaatgtatgttcttctcattctcaaaatatatcatgtttcgttgtgtatgtgcatatgtgaaaaacatacctattcatgatttctaacatcataaa |
2518120 |
T |
|
| Q |
359 |
taatcaaacattgttgtttaggttgctttatgttatcaagatggacatgcggttgaagtgaaaggagttgggagaaaagtcattgacaagctttgtgaaa |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2518121 |
taatcaaacattgttgtttaggttgctttatgttatcaagatggacatgcggttgaagtgaaaggagttgggagaaaagtcattgacaagctttgtgaaa |
2518220 |
T |
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| Q |
459 |
catatgatgtattaagaaacaagaattttgcatatgatggcgagaaaagtttattcactcttcgttctct |
528 |
Q |
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| T |
2518221 |
catatgatgtattaagaaacaagaattttgcatatgatggcgagaaaagtttattcactcttcgttctct |
2518290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 40763820 - 40763871
Alignment:
| Q |
566 |
agcagagagtttggagaaggaactgatacagaatcctcctcctactgaatct |
617 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40763820 |
agcagagaggttggagaaggaactgatacagaatcctcctcctactgaatct |
40763871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 40763940 - 40763991
Alignment:
| Q |
566 |
agcagagagtttggagaaggaactgatacagaatcctcctcctactgaatct |
617 |
Q |
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|||||| || ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40763940 |
agcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatct |
40763991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 566 - 614
Target Start/End: Original strand, 42911548 - 42911596
Alignment:
| Q |
566 |
agcagagagtttggagaaggaactgatacagaatcctcctcctactgaa |
614 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
42911548 |
agcagagaggttggagaaggaactgatacagaatcctcctccaactgaa |
42911596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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