View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0423_low_2 (Length: 403)
Name: NF0423_low_2
Description: NF0423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0423_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 41795382 - 41795457
Alignment:
| Q |
98 |
agaagaagaagttgaactatttgatgcagatgatgaagatggagataaattgtcggaaattgattacattctaatt |
173 |
Q |
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| T |
41795382 |
agaagaagaagttgaactatttgatgcagatgatgaagacggagataaagggtcggaaattgattacattctaatt |
41795457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 41760584 - 41760656
Alignment:
| Q |
101 |
agaagaagttgaactatttgatgcagatgatgaagatggagataaattgtcggaaattgattacattctaatt |
173 |
Q |
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| T |
41760584 |
agaagaagttgaactatttgatgcacatgatgatgagggagataaattgtcggaaattgattacattctaatt |
41760656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 41760725 - 41760789
Alignment:
| Q |
242 |
ttgtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaag |
306 |
Q |
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| T |
41760725 |
ttgtgtgctaagtacagaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaag |
41760789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 41795516 - 41795578
Alignment:
| Q |
244 |
gtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaag |
306 |
Q |
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| T |
41795516 |
gtgtgttaagtacagaagagttaaacaaaaaattcgaagatttcattagaaagatgaaagaag |
41795578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 23507400 - 23507455
Alignment:
| Q |
246 |
gtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaa |
301 |
Q |
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| T |
23507400 |
gtgctaagcactgaggagttgaacaaaaaatttgatgacttcattaaaaagatgaa |
23507455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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