View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0423_low_3 (Length: 381)
Name: NF0423_low_3
Description: NF0423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0423_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 39882944 - 39883284
Alignment:
| Q |
13 |
cagacccattgctttatgtaacgcgagctataaaataatttgaaaaatcttggcttatagaataaggaatatcatgccttatgtggtctcacaacatgaa |
112 |
Q |
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| T |
39882944 |
cagacccattgctttatgtaacgtgagctataaaataatttaaaaaatcttggcttatagaataaggaatatcatgccttatgtggtctcacaacatgca |
39883043 |
T |
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| Q |
113 |
ggtagttttataccaggacgttcttcaacttcaaagtagtttgaagctgctacaagctttatgttaatatatcgtgattggtctatatcaatgaaacata |
212 |
Q |
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| T |
39883044 |
agtagttttataccaggacgttcttcaacttcaaagtagtttgaagctgctacaagctttatgttaatatatcgtgattggtctatatcaatgaaacata |
39883143 |
T |
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| Q |
213 |
aagcttgtgatgcatgagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttttg |
312 |
Q |
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| T |
39883144 |
aagcttgtgatgtatgagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttttg |
39883243 |
T |
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| Q |
313 |
tttggattaaatggaacttgaagtgcatggaaattgttaat |
353 |
Q |
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| T |
39883244 |
tttggattaaatggaacttgacgtgcaaggaaattgttaat |
39883284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 331
Target Start/End: Complemental strand, 40645543 - 40645441
Alignment:
| Q |
228 |
gagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaatgga |
327 |
Q |
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| T |
40645543 |
gagattgtgaggacactaaggagctttggtca-agggtcataaaagaagaatattggagttagttctccaggctcgatctttttgtttggattgaatgga |
40645445 |
T |
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| Q |
328 |
actt |
331 |
Q |
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|||| |
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| T |
40645444 |
actt |
40645441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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