View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0423_low_4 (Length: 281)

Name: NF0423_low_4
Description: NF0423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0423_low_4
NF0423_low_4
[»] chr4 (4 HSPs)
chr4 (71-233)||(23505902-23506064)
chr4 (71-214)||(2752579-2752722)
chr4 (71-211)||(44354937-44355075)
chr4 (234-281)||(23505871-23505918)
[»] chr1 (3 HSPs)
chr1 (95-233)||(52094902-52095036)
chr1 (175-231)||(37182925-37182981)
chr1 (234-280)||(52095020-52095066)
[»] chr6 (2 HSPs)
chr6 (154-233)||(7538714-7538792)
chr6 (226-262)||(7538768-7538804)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 23506064 - 23505902
Alignment:
Q  71 acatcatcaacaaactcaaacattcaaaccttcatggcataatccaaaaaattcatgnnnnnnntccaacaataacataattctttaacaaataatcttc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||     
T  23506064 acatcatcaacaaactcaaacattcaaaccttcatggcataatccaaaaaattcatgaaaaaaatccaacaataacataattctttaacaaataatcttt 23505965  T
Q  171 taatcaacaacaagacaattctttagcaaactcattcatcttcccaaattcatcatcttccct 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23505964 taatcaacaacaagacaattctttagcaaactcattcatcttcccaaattcatcatcttccct 23505902  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 2752722 - 2752579
Alignment:
Q  71 acatcatcaacaaactcaaacattcaaaccttcatggcataatccaaaaaattcatgnnnnnnntccaacaataacataattctttaacaaataatcttc 170  Q
    |||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||       ||||||||||||| |||||||||||| |||||||||    
T  2752722 acatcatcaacaaacctaaacattcaaatcttcatggcataatccaaaacattcatgaaaaaaatccaacaataacacaattctttaacatataatcttc 2752623  T
Q  171 taatcaacaacaagacaattctttagcaaactcattcatcttcc 214  Q
    ||||||||||||| |||||| |||| |||| |||||||||||||    
T  2752622 taatcaacaacaacacaattatttaacaaagtcattcatcttcc 2752579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 44355075 - 44354937
Alignment:
Q  71 acatcatcaacaaactcaaacattcaaaccttcatggcataatccaaaaaattcatgnnnnnnntccaacaataacataattctttaacaaataatcttc 170  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||| |||||||       ||||||||||||| ||||||||||| | ||||||||    
T  44355075 acatcatcaacaaacctaaacattcaaaccttcatggcataatccaaaacattcatgaaaaaa-tccaacaataacacaattctttaacta-taatcttc 44354978  T
Q  171 taatcaacaacaagacaattctttagcaaactcattcatct 211  Q
    ||||||||||||| |||||| |||| |||| ||||||||||    
T  44354977 taatcaacaacaacacaattatttaacaaagtcattcatct 44354937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 23505918 - 23505871
Alignment:
Q  234 aattcatcatcttccctctatcaacaacataaaaacatattataaaaa 281  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  23505918 aattcatcatcttccctctatcaacaacacaaacacatcttataaaaa 23505871  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 52094902 - 52095036
Alignment:
Q  95 caaaccttcatggcataatccaaaaaattcatgnnnnnnntccaacaataacataattctttaacaaataatcttctaatcaacaacaagacaattcttt 194  Q
    ||||| |||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||| | ||||   ||| ||||||    
T  52094902 caaacattcatggcataatccaaaaaattcatgaaaaaa-tccaacaataacacaattctttaacaaataatcttctaataagcaac---acatttcttt 52094997  T
Q  195 agcaaactcattcatcttcccaaattcatcatcttccct 233  Q
    | |||||||||| ||||| ||||||||||||||||||||    
T  52094998 aacaaactcatttatctttccaaattcatcatcttccct 52095036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 37182981 - 37182925
Alignment:
Q  175 caacaacaagacaattctttagcaaactcattcatcttcccaaattcatcatcttcc 231  Q
    ||||||||| ||||| ||||| |||| |||||||||||  |||||||||||||||||    
T  37182981 caacaacaacacaatcctttaacaaagtcattcatcttttcaaattcatcatcttcc 37182925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 52095020 - 52095066
Alignment:
Q  234 aattcatcatcttccctctatcaacaacataaaaacatattataaaa 280  Q
    ||||||||||||||||||||||||||||| ||| |||| ||| ||||    
T  52095020 aattcatcatcttccctctatcaacaacacaaacacatcttaaaaaa 52095066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 7538714 - 7538792
Alignment:
Q  154 tttaacaaataatcttctaatcaacaacaagacaattctttagcaaactcattcatcttcccaaattcatcatcttccct 233  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| ||||||| ||| |||||||||||||||||||||||||    
T  7538714 tttaacaaagaatcttctaatcaacaacaacaca-ttctttaacaaactcgttcttcttcccaaattcatcatcttccct 7538792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 7538768 - 7538804
Alignment:
Q  226 tcttccctaattcatcatcttccctctatcaacaaca 262  Q
    ||||||| |||||||||||||||||||||||||||||    
T  7538768 tcttcccaaattcatcatcttccctctatcaacaaca 7538804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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