View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_high_1 (Length: 534)
Name: NF0424_high_1
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_high_1 |
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| [»] scaffold0716 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 30 - 524
Target Start/End: Complemental strand, 36162013 - 36161519
Alignment:
| Q |
30 |
cttgaagttgaggtttattgggatgtttataattggctttttggtacatcttttggaaatgctgttttcatgtttagaacatgtttctctcaagataaaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36162013 |
cttgaagttgaggtttattgggatgtttataattggctttttggtacatcttttggaaatgctgttttcatgtttagaacatgtttctctcaagataaaa |
36161914 |
T |
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| Q |
130 |
tttgggatgctcaacctgtttccgatgcaaatgttttgcagtggtctttctctcagaggttttctgagaccaaattgcagcaacaaggtgttggtttctc |
229 |
Q |
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| T |
36161913 |
tttgggatgctcaacctgtttccgatgcaaatgttttgcagtggtctttctctcagaggttttctgagaccaaattgcagcaacaaggtgttggtttctc |
36161814 |
T |
|
| Q |
230 |
acttgttttgtatgcttggaagaatgaatagagttgcggaattccggcatcatccatttgagtactaacagaatcgttaatgagtcgtgaagctgtgatt |
329 |
Q |
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| T |
36161813 |
acatattttgtatgcttggaagaatgaatagagttgcggaattccggcatcatccaattgagtactaacagaatcgttaatgagtcgtgaagctgtgatt |
36161714 |
T |
|
| Q |
330 |
gaagaattacacttgattaaagatgagaacttttgtttgtactgttttatcctttatattcatacccttaatttatctgtgcattttaatagatcttaga |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36161713 |
gaagaattacacttgattaaagatgagaacttttgtttgtactgttttatcctttatattcatacccttaatttatctgtgcatttgaatagatcttaga |
36161614 |
T |
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| Q |
430 |
atttttctcccccaatttgatgtatatttatcttcaagtgttaattttatgattcatgctacaaaaactagatggtcaattgtttatgatctgtg |
524 |
Q |
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| T |
36161613 |
atttttctcccccaatttgatgtatatttatcttcaagtgttaattttatgattcatgctacaaaaactagatggtcaattgtttatgatctgtg |
36161519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 8e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 29 - 331
Target Start/End: Original strand, 29172176 - 29172473
Alignment:
| Q |
29 |
acttgaagttgaggtttattgggatgtttataattggctttttggtacatcttttggaaatgctgttttcatgtttagaacatgtttctctcaagataaa |
128 |
Q |
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||||||||||||||||| |||||||||||||||||| || | |||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
29172176 |
acttgaagttgaggtttgttgggatgtttataattgactatgtggtacatctttagaaaatgttgttttcatgtttacaacatgtttctctcaagataaa |
29172275 |
T |
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| Q |
129 |
atttgggatgctcaacctgtttccgatgcaaatgttttgcagtggtctttctctcagagg-ttttctgagaccaaattgcagcaacaaggtgttggtttc |
227 |
Q |
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| T |
29172276 |
acttgggatgctcaacccgtttctgatgcaaatgttttgcgatggtatttctttaagaggttttttttagaccaaattgtagcaacaaggtgttggtttc |
29172375 |
T |
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| Q |
228 |
tcacttgttttgtatgcttggaagaatgaatagagttgcggaattccggcatcatccatttgagtactaacagaatcgttaatgagtcgtgaagctgtga |
327 |
Q |
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| T |
29172376 |
ttacatgttttgtatgtttggaagaatgaatagagttgcggaattttggcat------attgagtactaacataattgttaatgagttatgaagttgtga |
29172469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 34 - 263
Target Start/End: Original strand, 6314 - 6543
Alignment:
| Q |
34 |
aagttgaggtttattgggatgtttataattggctttttggtacatcttttggaaatgctgttttcatgtttagaacatgtttctctcaagataaaatttg |
133 |
Q |
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|||||||||||||||||| | |||||||| | || ||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||||||||| |
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| T |
6314 |
aagttgaggtttattgggttttttataatcgactatttggtacatcttttggaaattctgttttcgtgtttagaacatgcatgtctcgagataaaatttg |
6413 |
T |
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| Q |
134 |
ggatgctcaacctgtttccgatgcaaatgttttgcagtggtctttctctcagaggttttctgagaccaaattgcagcaacaaggtgttggtttctcactt |
233 |
Q |
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|||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| | |
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| T |
6414 |
ggatgctcaacctgtttctgatgtaaatgttttgtagtggtgtttctctcagaggttttttgagactaaattgcagcaacaaggtgtcggtttctcacat |
6513 |
T |
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| Q |
234 |
gttttgtatgcttggaagaatgaatagagt |
263 |
Q |
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| T |
6514 |
gttttgtacgcttggaagaatgaattgagt |
6543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0716; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 333 - 486
Target Start/End: Original strand, 6601 - 6755
Alignment:
| Q |
333 |
gaattacacttgattaaagatgagaacttttgtttgtactgttttatcctttatattcatacccttaatttatctgtgcattttaatagatcttagaatt |
432 |
Q |
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||||||||||| |||||||| |||||||||||||||| ||||| |||| ||||||| ||||| ||||||| | ||||||||| || | || ||||||| |
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| T |
6601 |
gaattacactttattaaagacaagaacttttgtttgtattgtttcatccattatatttatacctttaatttgtttgtgcatttgaacaaatgatagaatt |
6700 |
T |
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| Q |
433 |
tttctcccccaatttgatgtatatttatctt-caagtgttaattttatgattcat |
486 |
Q |
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|||||| ||||| | | || |||| |||||| ||||||||||||||||||||||| |
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| T |
6701 |
tttctctcccaaatggttggatatctatcttccaagtgttaattttatgattcat |
6755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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