View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_high_13 (Length: 311)
Name: NF0424_high_13
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 115 - 260
Target Start/End: Complemental strand, 30026356 - 30026210
Alignment:
| Q |
115 |
ctattaaccactggcaaccttcgaatgtcatgcacaagaaaaa-gagcagccaaattaatcttaataatattggtggaaagcatagaatataggcagaaa |
213 |
Q |
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| T |
30026356 |
ctattaaccactggtagccttcgaatgtcatgcacaagaaaaaagagcagccaaattaatcttaataatattggtggaaagcatagaatataggaaggaa |
30026257 |
T |
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| Q |
214 |
agttgtcaatcattcccatcaacacgatccttgatactccggttcat |
260 |
Q |
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| T |
30026256 |
agttgtcaatcattcccatcaacacgatccttgatactctggttcat |
30026210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 28427111 - 28426991
Alignment:
| Q |
143 |
catgcacaagaaaaagagcagccaaattaatcttaataata---ttggtggaaagcatagaatataggcagaaaagttgtcaatcattcccatcaacacg |
239 |
Q |
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| T |
28427111 |
catgcacaagaaaatgaggagccaaattaatcttattaataatgttggtgggaagtattgaatataggcgagaaagtttccaatcattcccatcaacaag |
28427012 |
T |
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| Q |
240 |
atccttgatactccggttcat |
260 |
Q |
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| T |
28427011 |
gtccttgatactccagttcat |
28426991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 42469900 - 42469780
Alignment:
| Q |
143 |
catgcacaagaaaaagagcagccaaattaatcttaataata---ttggtggaaagcatagaatataggcagaaaagttgtcaatcattcccatcaacacg |
239 |
Q |
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| T |
42469900 |
catgcataagaaaatgaggagccgaattaatcttattaataatgttggtgggaagtatggaatattagcgagaaagttttcaatcattcccatcaacaag |
42469801 |
T |
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| Q |
240 |
atccttgatactccggttcat |
260 |
Q |
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| T |
42469800 |
gtccttgatactccagttcat |
42469780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 39169483 - 39169363
Alignment:
| Q |
143 |
catgcacaagaaaaagagcagccaaattaatcttaataata---ttggtggaaagcatagaatataggcagaaaagttgtcaatcattcccatcaacacg |
239 |
Q |
| |
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|||||||||||||| ||| |||| ||||||||||| ||||| ||||||| ||| || |||||||||| |||||| | |||||| ||||||||| | |
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| T |
39169483 |
catgcacaagaaaatgaggagccgaattaatcttattaataatgttggtgggaagtatggaatataggcgagaaagtttccgatcatttccatcaacaag |
39169384 |
T |
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| Q |
240 |
atccttgatactccggttcat |
260 |
Q |
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| T |
39169383 |
gtccttgatactccagttcat |
39169363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 253
Target Start/End: Complemental strand, 17161030 - 17160915
Alignment:
| Q |
140 |
tgtcatgcacaagaaaaagagcagccaaattaatcttaataatattg---gtggaaagcatagaatataggcagaaaagttgtcaatcattcccatcaac |
236 |
Q |
| |
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||||||||| |||||| ||| |||||||||||||||| ||||| || |||| ||| || |||||||||| |||||| |||||||| |||||||| |
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| T |
17161030 |
tgtcatgcataagaaat-gaggagccaaattaatcttattaataatgccggtggtaagtatggaatataggcgataaagtttccaatcatttccatcaac |
17160932 |
T |
|
| Q |
237 |
acgatccttgatactcc |
253 |
Q |
| |
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| T |
17160931 |
aacatccttgatactcc |
17160915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 253
Target Start/End: Original strand, 6931775 - 6931887
Alignment:
| Q |
143 |
catgcacaagaaaaagagcagccaaattaatctt--aataatattggtggaaagcatagaatataggcagaaaagttgtcaatcattcccatcaacacga |
240 |
Q |
| |
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|||||||||||||| ||| |||| |||||||||| |||||| ||| ||| ||| || |||||||||| |||||| | |||||||||||||||| | |
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| T |
6931775 |
catgcacaagaaaatgaggagccgaattaatcttttaataatgttgatgggaagtatggaatataggcgagaaagtttccgatcattcccatcaacaagg |
6931874 |
T |
|
| Q |
241 |
tccttgatactcc |
253 |
Q |
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||||||||||||| |
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| T |
6931875 |
tccttgatactcc |
6931887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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