View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0424_high_15 (Length: 294)

Name: NF0424_high_15
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0424_high_15
NF0424_high_15
[»] chr2 (1 HSPs)
chr2 (29-284)||(45520927-45521182)
[»] chr4 (1 HSPs)
chr4 (140-222)||(349765-349847)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 45520927 - 45521182
Alignment:
Q  29 agattagatacaatttcacatcttcttcttcttcattgatcattcaattaaatggcatcatctaaacaagaaacaaaggaaataatattcaagtcgaaac 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45520927 agattagatacaatttcacatcttcttcttcttcattgatcattcaattaaatggcatcatctaaacaagaaacaaaggaaataatattcaagtcgaaac 45521026  T
Q  129 taccagacatatacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccac 228  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45521027 taccagacatatacatcccaaaccatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccac 45521126  T
Q  229 tggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgtctctg 284  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45521127 cggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctg 45521182  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 349765 - 349847
Alignment:
Q  140 tacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgc 222  Q
    ||||| || ||||| || || |||||||||||||| ||||||||||| ||  |||  ||||||||||| || |||||||||||    
T  349765 tacattcccaaacaccttcctcttcattcatattgctttgaaaatctatcaaaatatggttcacgtccttgcctcatcaatgc 349847  T

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