View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_high_16 (Length: 289)
Name: NF0424_high_16
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_high_16 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 33442023 - 33441754
Alignment:
| Q |
20 |
tcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcac |
119 |
Q |
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| T |
33442023 |
tcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcac |
33441924 |
T |
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| Q |
120 |
catcacttgacctggtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccgtgctgccaaagaagcttttcca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33441923 |
catcacttgacctggtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttcca |
33441824 |
T |
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| Q |
220 |
aatatttaacagagattgatagctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggaga |
289 |
Q |
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| T |
33441823 |
aatatttaacagagattgatagctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggaga |
33441754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 33452243 - 33451974
Alignment:
| Q |
20 |
tcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452243 |
tcaagtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcac |
33452144 |
T |
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| Q |
120 |
catcacttgacctggtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccgtgctgccaaagaagcttttcca |
219 |
Q |
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| T |
33452143 |
catcacttgacctggtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttcca |
33452044 |
T |
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| Q |
220 |
aatatttaacagagattgatagctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggaga |
289 |
Q |
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| T |
33452043 |
aatatttaacagagattgatagctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggaga |
33451974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 33399703 - 33399629
Alignment:
| Q |
24 |
gtgttaccgatcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccag |
98 |
Q |
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| T |
33399703 |
gtgttgccaatcactgcgaaaatggacaaaagcttttcataaatgttttaccaaaacaagatggttggtatccag |
33399629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 33395790 - 33395729
Alignment:
| Q |
50 |
caaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttc |
111 |
Q |
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|||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
33395790 |
caaaagcttttcataaacgtgcagccaccacagtttggttggtctccagtaccctcaccttc |
33395729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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