View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_high_22 (Length: 251)
Name: NF0424_high_22
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 52056498 - 52056688
Alignment:
| Q |
22 |
catcatcattatcgtcacatctttggccacctagtaattgtctatgtttccttctcaatagcaatttccttcattttgtttagtctggtcacattagact |
121 |
Q |
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| T |
52056498 |
catcgtcattatcgtcacatctttggccacctagtaattgtctaagtttccttctcaatagcattttccttcattttgtttagtctggtcacattagact |
52056597 |
T |
|
| Q |
122 |
ttacatcgacaccacaattttagtcctgtaattaagggatttattgactttcctcacaatgtaaaattaaactcctaattaaaatttgtca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52056598 |
ttacatcgacaccacaattttagtcctgtaattaagtgatttattgactttcctcacaatgtaaaattaaactcctaattaaaatttgtca |
52056688 |
T |
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