View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0424_high_30 (Length: 201)
Name: NF0424_high_30
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_high_30 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 33441612 - 33441778
Alignment:
| Q |
39 |
agcaaataatttcaataactctcatgacttttattaatcatcaataacaagatgatattacattcacca----aagcaaataacataaataataatgaag |
134 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||| || |||| | |||||||||||||||| |
|
|
| T |
33441612 |
agcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaag |
33441711 |
T |
|
| Q |
135 |
ggggctaattattagtaataactaactggggaaaaaacagcctctccttgaaacatcacacatgatc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33441712 |
ggggctaattattagtaataactaactgggaaaaaaacagcctctccttgaaacatcacacatgatc |
33441778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 33451832 - 33451998
Alignment:
| Q |
39 |
agcaaataatttcaataactctcatgacttttattaatcatcaataacaagatgatattacattcacca----aagcaaataacataaataataatgaag |
134 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||| || |||| | |||||||||||||||| |
|
|
| T |
33451832 |
agcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaag |
33451931 |
T |
|
| Q |
135 |
ggggctaattattagtaataactaactggggaaaaaacagcctctccttgaaacatcacacatgatc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33451932 |
ggggctaattattagtaataactaactgggaaaaaaacagcctctccttgaaacatcacacatgatc |
33451998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 301 times since January 2019
Visitors: 3263