View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_high_5 (Length: 371)
Name: NF0424_high_5
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_high_5 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 38 - 371
Target Start/End: Complemental strand, 33442087 - 33441754
Alignment:
| Q |
38 |
acctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
137 |
Q |
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| T |
33442087 |
acctgtgttaaccagtgggcaagacaaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
33441988 |
T |
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| Q |
138 |
cttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacctgaagcaccgcctt |
237 |
Q |
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| T |
33441987 |
cttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacctgaagcaccgcctt |
33441888 |
T |
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| Q |
238 |
cgaatgcaccatggcctgctagtagcgttccccgtcgatccgtgctgccaaagaagcttttccaaatatttaacagagattgatagctgtttaagattgg |
337 |
Q |
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| T |
33441887 |
cgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttccaaatatttaacagagattgatagctgtttaagattgg |
33441788 |
T |
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| Q |
338 |
atgttaaccgatcatgtgtgatgtttcaaggaga |
371 |
Q |
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| T |
33441787 |
atgttaaccgatcatgtgtgatgtttcaaggaga |
33441754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 38 - 371
Target Start/End: Complemental strand, 33452307 - 33451974
Alignment:
| Q |
38 |
acctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
137 |
Q |
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| T |
33452307 |
acctgtgttaaccagtgggcaagacaaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
33452208 |
T |
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| Q |
138 |
cttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacctgaagcaccgcctt |
237 |
Q |
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| T |
33452207 |
cttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctggtgacacctgaagcaccgcctt |
33452108 |
T |
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| Q |
238 |
cgaatgcaccatggcctgctagtagcgttccccgtcgatccgtgctgccaaagaagcttttccaaatatttaacagagattgatagctgtttaagattgg |
337 |
Q |
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| T |
33452107 |
cgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttccaaatatttaacagagattgatagctgtttaagattgg |
33452008 |
T |
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| Q |
338 |
atgttaaccgatcatgtgtgatgtttcaaggaga |
371 |
Q |
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| T |
33452007 |
atgttaaccgatcatgtgtgatgtttcaaggaga |
33451974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 180
Target Start/End: Complemental strand, 33399776 - 33399629
Alignment:
| Q |
33 |
gcagaacctgtgttaactagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggac |
132 |
Q |
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|||| ||| |||||||| |||||||| ||||||||| | | |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
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| T |
33399776 |
gcagcaccagtgttaacaagtggacatgataaaattgcattgacaacctatgggagaagatggtacatttcaggtgttgccaatcactgcgaaaatggac |
33399677 |
T |
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| Q |
133 |
aaaagcttttcataactgtgcagccaaaacaagatggttggtctccag |
180 |
Q |
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| T |
33399676 |
aaaagcttttcataaatgttttaccaaaacaagatggttggtatccag |
33399629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 33395880 - 33395729
Alignment:
| Q |
42 |
gtgttaactagtggacaagataaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaagcttt |
141 |
Q |
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||||||||||||||||| |||| |||| || | ||||||||||| |||||||||||||||||| ||| | | |||||||| | ||| |||||||||| |
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| T |
33395880 |
gtgttaactagtggacatgatacaattttattgacaacctatggaagaagatggtacatttcaggtgctgctcatcactgcaatcttggccaaaagcttt |
33395781 |
T |
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| Q |
142 |
tcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttc |
193 |
Q |
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|||||| ||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
33395780 |
tcataaacgtgcagccaccacagtttggttggtctccagtaccctcaccttc |
33395729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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