View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_1 (Length: 690)
Name: NF0424_low_1
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 22122000 - 22122314
Alignment:
| Q |
1 |
aatatgcacaaactcttcctttgtaaagttattcatctacacaacaataacatcaaagtttatgctacaattaaaacttaacattcaaattttaaaatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22122000 |
aatatgcacaaactcttcctttgtaaagttattcatctacacaacaataaaatcaaagtttatgctacaattaaaacttaacattcaaattttaaaatag |
22122099 |
T |
|
| Q |
101 |
atcacctcaaaaattactcatctacacatcaataaaatcaaagttaaagctacaattatactaacttacaattagattttaaacaagatcaacacaacat |
200 |
Q |
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| T |
22122100 |
atcatctcaaaaattactcatctacacatcaataaaatcaaagttaaagctacaattatactaacttacaattagattttaaacaagatcaacacaacat |
22122199 |
T |
|
| Q |
201 |
tagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgacattgaaattaatatccgcatccacgccacgaaactttatcgcagct |
300 |
Q |
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| T |
22122200 |
tagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgacattgaaattaatatccgcatccacgccacgaaactttatcgcagct |
22122299 |
T |
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| Q |
301 |
cgatcatatgctctg |
315 |
Q |
| |
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||||||||||||||| |
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| T |
22122300 |
cgatcatatgctctg |
22122314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 40512473 - 40512159
Alignment:
| Q |
1 |
aatatgcacaaactcttcctttgtaaagttattcatctacacaacaataacatcaaagtttatgctacaattaaaacttaacattcaaattttaaaatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512473 |
aatatgcacaaactcttcctttgtaaagttattcatctacacaacaataaaatcaaagtttatgctacaattaaaacttaacattcaaattttaaaatag |
40512374 |
T |
|
| Q |
101 |
atcacctcaaaaattactcatctacacatcaataaaatcaaagttaaagctacaattatactaacttacaattagattttaaacaagatcaacacaacat |
200 |
Q |
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| T |
40512373 |
atcatctcaaaaattactcatctacacatcaataaaatcaaagttaaagctacaattatactaacttacaattagattttaaacaagatcaacacaacat |
40512274 |
T |
|
| Q |
201 |
tagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgacattgaaattaatatccgcatccacgccacgaaactttatcgcagct |
300 |
Q |
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| T |
40512273 |
tagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgacattgaaattaatatccgcatccacgccacgaaactttatcgcagct |
40512174 |
T |
|
| Q |
301 |
cgatcatatgctctg |
315 |
Q |
| |
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||||||||||||||| |
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| T |
40512173 |
cgatcatatgctctg |
40512159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 520 - 611
Target Start/End: Complemental strand, 40511954 - 40511863
Alignment:
| Q |
520 |
gtctcaaataatcacttaatcagtaatgatttctcacctaagtatacttgttttccacaatccctgcagaaaaacgaaaacagagtggattc |
611 |
Q |
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| T |
40511954 |
gtctcaaataatcacttaatcagtaatgatttctcacctaagtatacttgttttccacaatccctgcagaaaaacgaaaacagagtggattc |
40511863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 449
Target Start/End: Original strand, 22122413 - 22122448
Alignment:
| Q |
414 |
accttgccgcagcatgcgcggtatcaaatccacctg |
449 |
Q |
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| T |
22122413 |
accttgccgcagcatgcgcggtatcaaatccacctg |
22122448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 449
Target Start/End: Complemental strand, 40512060 - 40512025
Alignment:
| Q |
414 |
accttgccgcagcatgcgcggtatcaaatccacctg |
449 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40512060 |
accttgccgcagcatgcgcggtatcaaatccacctg |
40512025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 39644554 - 39644458
Alignment:
| Q |
219 |
acaaacctgctttatatcttcatcataatcactgacattgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
315 |
Q |
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||||||||| || |||||||| ||||| ||| | |||||||||||| || ||||| | || | ||||||||| |||||||||||||| |||||| |
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| T |
39644554 |
acaaacctgattcatatcttcctcatactcaactagattgaaattaatgtcagcatcaagtcccctaaactttatagcagctcgatcataggctctg |
39644458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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