View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_10 (Length: 358)
Name: NF0424_low_10
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 136 - 312
Target Start/End: Original strand, 31942334 - 31942504
Alignment:
| Q |
136 |
tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctcttcc |
235 |
Q |
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| T |
31942334 |
tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc---- |
31942429 |
T |
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| Q |
236 |
tgtttctgttcctatgacaaacaataacattgaaccattcaatcaaactttacttcctttaaccaacagcaccaata |
312 |
Q |
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| T |
31942430 |
--tttctgttcctatgacaaacaataatattgaaccattcaatcaaagtttacttccttttaccaacagcaccaata |
31942504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 136 - 312
Target Start/End: Original strand, 32001293 - 32001463
Alignment:
| Q |
136 |
tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctcttcc |
235 |
Q |
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| T |
32001293 |
tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctc---- |
32001388 |
T |
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| Q |
236 |
tgtttctgttcctatgacaaacaataacattgaaccattcaatcaaactttacttcctttaaccaacagcaccaata |
312 |
Q |
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| T |
32001389 |
--tttctgttcctatgacaaacaataatattgaaccattcaatcaaagtttacttcctttgaccaacagcaccaata |
32001463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31942199 - 31942289
Alignment:
| Q |
1 |
caagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc |
91 |
Q |
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| T |
31942199 |
caagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc |
31942289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 32001158 - 32001248
Alignment:
| Q |
1 |
caagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc |
91 |
Q |
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| T |
32001158 |
caagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc |
32001248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 32004022 - 32004112
Alignment:
| Q |
1 |
caagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc |
91 |
Q |
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|||||||||| || ||||||||||| ||||||||||||||||||||||| | || |||||||||||| ||||||||| ||||||||||||| |
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| T |
32004022 |
caagacttttcctcaacaaaatcacaccactcattcaaccttcacttcccctttctcttgatattctaaaagcatggtaaagttcatggtc |
32004112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 32004137 - 32004236
Alignment:
| Q |
144 |
atgtatgctatgatgttatccaatgatga---tcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttacctcttcctgttt |
240 |
Q |
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||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||| || ||||||||| |||||||| | ||||||||||||| |
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| T |
32004137 |
atgtatgttatgatgtcatccaatgatgaaaatcttgaatctcctacatccactttgaacttcccgggaacaaccctgcttcctcttcctcttcctgttt |
32004236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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