View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_11 (Length: 353)
Name: NF0424_low_11
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 7810124 - 7809930
Alignment:
| Q |
80 |
cacagatattgttaaaatatataagcaattgtataaataaataa--------ctaataagattcatcaaagcaatattatttatttatcaaatgtgtggt |
171 |
Q |
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| T |
7810124 |
cacagatattgttaaaatatataagcaattctataaataaataaataaataactaataagattcatcaaagcaatattatttatttatcaaatgtgtggt |
7810025 |
T |
|
| Q |
172 |
ac-catacgacgcatctgaataaattgtaaatttatagtactgctgccaacttcatc--atatacctgtatctctttgatgttgacctcttaatt |
263 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7810024 |
actcatacgacgcatctgaataaattgtaaatttatagcactgctgccaacttcatcatatatacctgtatctctttgatgttgacctcttaatt |
7809930 |
T |
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