View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_15 (Length: 321)
Name: NF0424_low_15
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_15 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 24907565 - 24907850
Alignment:
| Q |
30 |
attgctgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaacataagaaat |
129 |
Q |
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| T |
24907565 |
attgctgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaatataagaaat |
24907664 |
T |
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| Q |
130 |
aagattcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaatgataaatacatcatataccagaaacatggaacca |
229 |
Q |
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| T |
24907665 |
aagattcatcataatgaat------catgattccctttggaaccacatgtatcctaataactaaacgataaatacatcatataccagaaacatggaacca |
24907758 |
T |
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| Q |
230 |
acatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttc |
321 |
Q |
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| T |
24907759 |
acatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttc |
24907850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 35 - 321
Target Start/End: Original strand, 24889863 - 24890149
Alignment:
| Q |
35 |
tgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaacataagaaataagat |
134 |
Q |
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|||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||| |
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| T |
24889863 |
tgatcaatttttgtatggaaagtggaaccaataagcaataacagaagtaaatatatgaacatttattcaatgtagtaccccacaacataagaaataagat |
24889962 |
T |
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| Q |
135 |
tcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaat-gataaatacatcatataccagaaacatggaaccaacat |
233 |
Q |
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| T |
24889963 |
tcatcataatatattta-cccattattccctttggaaccacatgtatcctaacaacaaaaaagataaatacatcacataccaaaagtatgaacccaacat |
24890061 |
T |
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| Q |
234 |
catttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttc |
321 |
Q |
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| T |
24890062 |
catttgcaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgatgtcgattttc |
24890149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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