View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_16 (Length: 319)
Name: NF0424_low_16
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 4092625 - 4092349
Alignment:
| Q |
30 |
atatcatcattcatacacggacaaaacaaataa-ccatctccactccactcttgatttaacgatcttataattaatatggtccctccaatcccctttata |
128 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4092625 |
atatcatcattcatacacggacaaaacaaaaaaaccatctccactccactcttgatttaacgatcttataattaatatggtccccccaatcccctttata |
4092526 |
T |
|
| Q |
129 |
taaacttcaatccatgaaatggaacaatatatatagccccactcattcattcttctatttcaaccaacaaaaaccttccctattctcttactatatgaaa |
228 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092525 |
taaactttaatccatgaaatggaacaatatatatagccccactcattcattcttctatttcaaccaacaaaaaccttccctattctcttactatatgaaa |
4092426 |
T |
|
| Q |
229 |
tatatgcacacataacataacataacaatgttgtttattagtgtaatcttaaatgttcctttggcttcaacaatattcatct |
310 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092425 |
tatatgcacacataacat-----aacaatgttgtttattagtgtaatcttaaatgttcctttggcttcaacaatattcatct |
4092349 |
T |
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