View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0424_low_23 (Length: 297)

Name: NF0424_low_23
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0424_low_23
NF0424_low_23
[»] chr8 (3 HSPs)
chr8 (30-233)||(36262529-36262740)
chr8 (32-92)||(36267692-36267752)
chr8 (251-293)||(36262763-36262805)
[»] chr2 (4 HSPs)
chr2 (30-93)||(5415239-5415302)
chr2 (32-87)||(5388697-5388752)
chr2 (32-87)||(5402506-5402561)
chr2 (43-87)||(5396817-5396861)
[»] chr4 (1 HSPs)
chr4 (32-74)||(33127789-33127831)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 36262529 - 36262740
Alignment:
Q  30 gatttactctcttggtcatatctctggtgctcatttcaatcctgctgttactattgcttttgctaccacaaggaggtttccattgttacaggtcaacact 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36262529 gatttactctcttggtcatatctctggtgctcatttcaatcctgctgttactattgcttttgctaccacaaggaggtttccattgttacaggtcaacact 36262628  T
Q  130 acacacaatcttttttctccataaagtttatttttgtat---ataatattttgac-----atacaaagttgataacatatgtactctatttactttatat 221  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||     |||||||||||||||||||| |||||||||||||||||||    
T  36262629 acacacaatcttttttctccataaagtttatttttgtatataataatattttgacatacaatacaaagttgataacatatatactctatttactttatat 36262728  T
Q  222 aatacaagataa 233  Q
    ||||||||||||    
T  36262729 aatacaagataa 36262740  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 36267692 - 36267752
Alignment:
Q  32 tttactctcttggtcatatctctggtgctcatttcaatcctgctgttactattgcttttgc 92  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||    
T  36267692 tttactctcttggtcacatctctggtgctcatttcaatcctgcagttaccattgcttttgc 36267752  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 36262763 - 36262805
Alignment:
Q  251 aatcttggcttcttgattagctacttttgcggtagaattatct 293  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  36262763 aatcttggcttcttgattagctactttttcggtataattatct 36262805  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 5415239 - 5415302
Alignment:
Q  30 gatttactctcttggtcatatctctggtgctcatttcaatcctgctgttactattgcttttgct 93  Q
    |||||||||| ||||||| || ||||||||||||||||| ||||||||||| ||||||||||||    
T  5415239 gatttactctgttggtcacatttctggtgctcatttcaaccctgctgttaccattgcttttgct 5415302  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 5388697 - 5388752
Alignment:
Q  32 tttactctcttggtcatatctctggtgctcatttcaatcctgctgttactattgct 87  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||| || ||||||    
T  5388697 tttactctgttggtcacatctctggtgctcatttcaaccctgctgtcaccattgct 5388752  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 5402506 - 5402561
Alignment:
Q  32 tttactctcttggtcatatctctggtgctcatttcaatcctgctgttactattgct 87  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||| || ||||||    
T  5402506 tttactctgttggtcacatctctggtgctcatttcaaccctgctgtcaccattgct 5402561  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 5396817 - 5396861
Alignment:
Q  43 ggtcatatctctggtgctcatttcaatcctgctgttactattgct 87  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||    
T  5396817 ggtcatatctctggtgctcatttcaatcccgctgtcaccattgct 5396861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 33127789 - 33127831
Alignment:
Q  32 tttactctcttggtcatatctctggtgctcatttcaatcctgc 74  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||    
T  33127789 tttattctcttggtcacatctctggtgcccatttcaatcctgc 33127831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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