View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_27 (Length: 281)
Name: NF0424_low_27
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 26210431 - 26210180
Alignment:
| Q |
30 |
attttcaatctcaaaagtcctaggctaagaaactcattagttcattccctaccaatgaagggtaacaacattgatcatgtcaaaaatgaagcaaagttgt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26210431 |
attttcaatctcaaaagtcctaggctaagaaactcattagttcattccctaccaatgaagggtaacaacattgatcatgtcaaaaatgaagcaaagttgt |
26210332 |
T |
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| Q |
130 |
ttccaaataaagaaccaaaggttccacaaaaaatctccaatgaaaatcggaagcgtagttcagatgctactgcaagaagctcgacatcatcatcctctgg |
229 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26210331 |
ttccaaataaagaaccaaaggttccacaaaaaatttccaatgaaaatcggaagcgtagttcagatgctactgcaagaagctcgacatcatcatcctctgg |
26210232 |
T |
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| Q |
230 |
tgctagttcaacccttaaaagggttgaacaaaaccataatacggatgatgat |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26210231 |
tgctagttcaacccttaaaagggttgaacaaaaccataatacagatgatgat |
26210180 |
T |
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