View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_28 (Length: 281)
Name: NF0424_low_28
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_28 |
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| [»] scaffold0101 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 27422682 - 27422450
Alignment:
| Q |
30 |
gataggttattaataaggattatgattgtgatagtgtgtgtttag-attcaaacaaataataaagagaaaagggtaagtagaagacacaagatatttgtc |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||| ||||||||| |
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| T |
27422682 |
gataggttattaataaggattatgattgtgatagtgtgtgtttagtattcaaacacctaataaagagataagggtaagcagaagacacaaaatatttgtc |
27422583 |
T |
|
| Q |
129 |
ctggttcacccaaagcaggatacttgcagtccccaaattatgtgtgatattttcaactattgtttccagccaccataccattcttagaagcacc-atgat |
227 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||| |
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| T |
27422582 |
ctggttcacccaaagcaggctacttacagtccccaaattatgtgtgatatttcaaactattgtttccggccaccataacattcttagaagcaccaatgat |
27422483 |
T |
|
| Q |
228 |
tcttgatcaccccagatcagtgttacattctgt |
260 |
Q |
| |
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|||||||||||||| |||||||||||| ||||| |
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| T |
27422482 |
tcttgatcaccccacatcagtgttacactctgt |
27422450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 21667555 - 21667774
Alignment:
| Q |
30 |
gataggttattaataaggattatgattgtgatagtgtgtgtttaga-ttcaaacaaataataaagagaaaagggtaagtagaagacacaagatatttgtc |
128 |
Q |
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||||| |||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||| ||||||||| ||| |||| |||| |||| || |
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| T |
21667555 |
gatagtttattaataaggattacgattgtgataatgtgtgtttagtgtttaaacaaataataaagagacaagggtaagaagatgacataagagatttatc |
21667654 |
T |
|
| Q |
129 |
ctggttcacccaaagcaggatacttgcagtccccaaattatgtgtgatattttcaactattgtttccagccaccataccattcttagaagcaccatgatt |
228 |
Q |
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||||||| |||||||| ||||| || | |||| | |||||| |||||| | ||| ||||| |||||||| | | ||||||| ||||| ||| || |
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| T |
21667655 |
atggttcatccaaagcatactactttcatttcccacagatcgtgtgagattttccattatagtttcaagccaccaaaacgttcttagcagcactatggtt |
21667754 |
T |
|
| Q |
229 |
cttgatcaccccagatcagt |
248 |
Q |
| |
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||||||||| | |||||||| |
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| T |
21667755 |
cttgatcacactagatcagt |
21667774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 21676319 - 21676538
Alignment:
| Q |
30 |
gataggttattaataaggattatgattgtgatagtgtgtgtttaga-ttcaaacaaataataaagagaaaagggtaagtagaagacacaagatatttgtc |
128 |
Q |
| |
|
||||| |||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||| ||||||||| ||| |||| |||| |||| || |
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| T |
21676319 |
gatagtttattaataaggattacgattgtgataatgtgtgtttagtgtttaaacaaataataaagagacaagggtaagaagatgacataagagatttatc |
21676418 |
T |
|
| Q |
129 |
ctggttcacccaaagcaggatacttgcagtccccaaattatgtgtgatattttcaactattgtttccagccaccataccattcttagaagcaccatgatt |
228 |
Q |
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||||||| |||||||| ||||| || | |||| | |||||| |||||| | ||| ||||| |||||||| | | ||||||| ||||| ||| || |
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| T |
21676419 |
atggttcatccaaagcatactactttcatttcccacagatcgtgtgagattttccattatagtttcaagccaccaaaacgttcttagcagcactatggtt |
21676518 |
T |
|
| Q |
229 |
cttgatcaccccagatcagt |
248 |
Q |
| |
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||||||||| | |||||||| |
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|
| T |
21676519 |
cttgatcacactagatcagt |
21676538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 13184387 - 13184344
Alignment:
| Q |
30 |
gataggttattaataaggattatgattgtgatagtgtgtgttta |
73 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
13184387 |
gatagtttattaataaggattatgattgtgatactgtgtgttta |
13184344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 41898 - 41934
Alignment:
| Q |
38 |
attaataaggattatgattgtgatagtgtgtgtttag |
74 |
Q |
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|||||||| ||||||||| |||||||||||||||||| |
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| T |
41898 |
attaataaagattatgatagtgatagtgtgtgtttag |
41934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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