View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0424_low_3 (Length: 513)
Name: NF0424_low_3
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_3 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 30 - 465
Target Start/End: Original strand, 42202381 - 42202816
Alignment:
| Q |
30 |
tgagttttgtgaacaagaggcggaaacggtaaatcatctttttctccattgtgtctggacatttaatgtttggtcgaaggttggtaggtagttgggaata |
129 |
Q |
| |
|
|||||||| |||||||| ||| |||||| |||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
42202381 |
tgagttttttgaacaagcggcttaaacggcaaatcacctttttctccattgtgactggacttttaatgtatggtcgaaggttggtaggtggttgggaata |
42202480 |
T |
|
| Q |
130 |
aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42202481 |
aatttcattacaccgcaatctctttttcaacattttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg |
42202580 |
T |
|
| Q |
230 |
cggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtg |
329 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42202581 |
cggttttatggtcgatttggaaagcccggaatgataggattttcaataatttaatgaaggattatggtgaaatagttgaggaaattaaggtgattttgtg |
42202680 |
T |
|
| Q |
330 |
gaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttag |
429 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42202681 |
gaattgggtgaattctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggcagttttag |
42202780 |
T |
|
| Q |
430 |
aggtgtctgggacttatggttctagagctcgcaggt |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42202781 |
aggtgtctgggacttatggttctagagctcgcaggt |
42202816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 120 - 449
Target Start/End: Original strand, 44684253 - 44684582
Alignment:
| Q |
120 |
gttgggaataaatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttg |
219 |
Q |
| |
|
|||||| || ||||| ||||| || ||| | || || ||||| ||||| ||||||| |||||| | |||||| || || ||||||||||||||| || |
|
|
| T |
44684253 |
gttggggattaattttattactcctcaaacgctcttccaacattttgagtgttggagtggggagactgggagactaaagctccgtaaaggttattggatg |
44684352 |
T |
|
| Q |
220 |
atatggcatgcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaagg |
319 |
Q |
| |
|
|| |||||||| ||| | ||| |||| ||||| | |||||||||||||||||||| | | ||| ||| |||| ||||| ||||| || ||||||| |
|
|
| T |
44684353 |
atttggcatgcagttctctggacgatctggaaaacgaggaatgataggatttttaattctattgtgaaagatcatggggaaattgttgatgacattaagg |
44684452 |
T |
|
| Q |
320 |
tgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggg |
419 |
Q |
| |
|
|| | || ||||||||||||| | | | ||||||||||||||| ||||||| ||| ||||||||||||||||| | |||||||| | || || |||| |
|
|
| T |
44684453 |
tgctctcttggaattgggcgattacaaaacttaagagtcctccctgcctcttttatgagtggtgttggaaccccaaggaatgcttgctccgacaggtggg |
44684552 |
T |
|
| Q |
420 |
gaagttttagaggtgtctgggacttatggt |
449 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |
|
|
| T |
44684553 |
gtagttttagaggtgtctgggacttttggt |
44684582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 25968111 - 25967989
Alignment:
| Q |
157 |
caacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggccc |
256 |
Q |
| |
|
||||| ||||||||||||| ||| || ||||||| || || |||||||||||||||||||||| ||||||||| ||||| ||||||| | || | |
|
|
| T |
25968111 |
caacactttgaatgttggagtggagagattgggaagaagagacttcgtaaaggttattggttggcgtggcatgcgtcggtatgggtgatttgggaagcgc |
25968012 |
T |
|
| Q |
257 |
ggaatgataggatttttaataat |
279 |
Q |
| |
|
| ||||| ||||||||||||||| |
|
|
| T |
25968011 |
gtaatgacaggatttttaataat |
25967989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 3578085 - 3578048
Alignment:
| Q |
355 |
agtcctccttgcctctattacgagtggtgttggaaccc |
392 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3578085 |
agtcctctttgcctcttttacgagtggtgttggaaccc |
3578048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 34 - 436
Target Start/End: Complemental strand, 3678642 - 3678241
Alignment:
| Q |
34 |
ttttgtgaacaagaggcggaaacggtaaatcatctttttctccattgtgtctggacatttaatgtttggtcgaaggttggtaggtagttgggaataaatt |
133 |
Q |
| |
|
|||||||| |||| ||||||||||| || |||||| || |||||||||| |||| | ||||| || ||||||||||| ||| ||| |||||| || ||| |
|
|
| T |
3678642 |
ttttgtgatcaagcggcggaaacggcaactcatctcttcctccattgtgactgggcttttaaagtgtggtcgaaggtcggtgggtggttggggattaatc |
3678543 |
T |
|
| Q |
134 |
tcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggt |
233 |
Q |
| |
|
|||||||||| |||||| | |||||||| ||||| |||||||||||||| || |||||||| |||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
3678542 |
tcattacacctcaatctatgtttcaacattttgagtgttggaatggggagatcgggaggagtaaacttcggaaaggtcattggttgatttggcatgcggt |
3678443 |
T |
|
| Q |
234 |
tttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaat |
333 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| || |||||| || ||||| ||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3678442 |
ggtatggacgatttggaaggcgcggaatgataggattttcaaaaatttatcgaaggattttggtgaaattgttgaggagattaaggtgatttcgtggaat |
3678343 |
T |
|
| Q |
334 |
tgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggt |
433 |
Q |
| |
|
|||| || | |||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||| | ||| |||||||||||| |
|
|
| T |
3678342 |
tgggtgattactagacttaagagtcctccttgcctctattacaagttgtgttggaaccccatcgaatgcttattaagataggt-gggcagttttagaggt |
3678244 |
T |
|
| Q |
434 |
gtc |
436 |
Q |
| |
|
||| |
|
|
| T |
3678243 |
gtc |
3678241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 130 - 442
Target Start/End: Complemental strand, 2756612 - 2756301
Alignment:
| Q |
130 |
aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg |
229 |
Q |
| |
|
||||| |||||||| ||||||| ||| ||||| ||||||||||||| |||||| ||||||| || |||||| ||||||| ||||| || | |||||| |
|
|
| T |
2756612 |
aattttattacacctcaatctcgttt-caacattttgaatgttggagtggggagattgggaagaaaaaactttgtaaaggaaattggatggtttggcatt |
2756514 |
T |
|
| Q |
230 |
cggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtg |
329 |
Q |
| |
|
| | |||||| |||||||||| || | ||||||||||||||||||||| | ||| |||||||||||||| ||||| || ||||||||| ||||||| |
|
|
| T |
2756513 |
caatcttatggacgatttggaaagcgagaaatgataggatttttaataatcttgtgaaagattatggtgaaattgttgatgagattaaggtgctttcgtg |
2756414 |
T |
|
| Q |
330 |
gaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttag |
429 |
Q |
| |
|
||||||| | | ||||||| ||||| ||||| ||||| ||||||||||||||||||||||| | |||| ||| |||||||| ||||| |||||||| |
|
|
| T |
2756413 |
gaattggatggtttctagactaaagaggcctccgtgcctttattacgagtggtgttggaaccccaagaaatgtttactgagatagttggggtagttttag |
2756314 |
T |
|
| Q |
430 |
aggtgtctgggac |
442 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
2756313 |
aggcgtccgggac |
2756301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 130 - 444
Target Start/End: Complemental strand, 42629309 - 42628996
Alignment:
| Q |
130 |
aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg |
229 |
Q |
| |
|
||||| |||||||| | |||||| |||||||| ||||||||||||| |||||| | |||| || || ||| ||||||| |||||| |||| ||||||| |
|
|
| T |
42629309 |
aattttattacacctcgatctctgtttcaacattttgaatgttggagtggggagaccgggaagaaaaagctttgtaaaggatattggatgatttggcatg |
42629210 |
T |
|
| Q |
230 |
cggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtg |
329 |
Q |
| |
|
|||| |||||| | |||||||| | | |||||||||||||||| |||| | ||| || | ||||||||| ||||| ||||||| |||| ||||||| |
|
|
| T |
42629209 |
cggtattatggac-atttggaaagtgagaaatgataggatttttagtaatcttgtgaaagaatttggtgaaattgttgatgaaattatggtgctttcgtg |
42629111 |
T |
|
| Q |
330 |
gaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttag |
429 |
Q |
| |
|
|||||||||| | ||||||| || |||||||| ||||||||||| ||||||||| ||||||| | ||||| | |||||||| ||||| |||||||| |
|
|
| T |
42629110 |
gaattgggcggttactagactgaaaagtcctccctgcctctattatgagtggtgtcggaaccccaaggaatgtcttctgagatagttggggtagttttag |
42629011 |
T |
|
| Q |
430 |
aggtgtctgggactt |
444 |
Q |
| |
|
||| ||| ||||||| |
|
|
| T |
42629010 |
aggcgtccgggactt |
42628996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 449
Target Start/End: Complemental strand, 3761104 - 3761007
Alignment:
| Q |
352 |
aagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggacttatggt |
449 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||| |||||| | ||||| ||| ||| |||| ||||| |||||||||||||| |||||||| |||| |
|
|
| T |
3761104 |
aagagttctccctgcctctattacgagtgctgtttgaaccccaaggaatgtttactgatatagctggggtagttttagaggtgtttgggacttttggt |
3761007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 3761307 - 3761247
Alignment:
| Q |
130 |
aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattggga |
190 |
Q |
| |
|
||||| |||||||| |||||| | |||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
3761307 |
aattttattacacctcaatctttgtttcaacattttgaatgttggagtggggagattggga |
3761247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 5e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 30 - 436
Target Start/End: Original strand, 55328842 - 55329248
Alignment:
| Q |
30 |
tgagttttgtgaacaagaggcggaaacggtaaatcatctttttctccattgtgtctggacatttaatgtttggtcgaaggttggtaggtagttgggaata |
129 |
Q |
| |
|
|||||||||||| || ||| ||||||| | |||||||||||||||||| | ||||| ||||| |||||||||||||||||| | | ||| || || |
|
|
| T |
55328842 |
tgagttttgtgatcatatggctgaaacggcgactcatctttttctccattgcgagtggacttttaaagtttggtcgaaggttggtggttggttagggatt |
55328941 |
T |
|
| Q |
130 |
aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg |
229 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||| || |||||| | ||| ||| ||||| ||||||||||| ||||| | |
|
|
| T |
55328942 |
aatttcattacacctcaatctctttttcaacattttgagtgttggaatggggagatagggaggcgtaaatttcaaaaaggatattggttgatttggcacg |
55329041 |
T |
|
| Q |
230 |
cggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtg |
329 |
Q |
| |
|
|||| |||||| |||||||||| || |||||||||||||||| ||||| | ||| ||||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
55329042 |
cggtgttatggacgatttggaaagcgaggaatgataggattttcaataaccttttgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtg |
55329141 |
T |
|
| Q |
330 |
gaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttag |
429 |
Q |
| |
|
||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |||||||| |
|
|
| T |
55329142 |
aaattgaacgaattcaagacttaagagttctccttgcctctattacgagtggtgttggaacctcaaggaatgcttattgagataggtggggcagttttag |
55329241 |
T |
|
| Q |
430 |
aggtgtc |
436 |
Q |
| |
|
||||||| |
|
|
| T |
55329242 |
aggtgtc |
55329248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 154 - 444
Target Start/End: Original strand, 18847870 - 18848160
Alignment:
| Q |
154 |
tttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaagg |
253 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||| || || ||| ||||||| ||||||||||| ||||||||||| |||||| |||||||||| | |
|
|
| T |
18847870 |
tttcaacattttgaatgttggagtggggagattgggaagaaaaagctttgtaaagggtattggttgatttggcatgcggtattatggacgatttggaaag |
18847969 |
T |
|
| Q |
254 |
cccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaa |
353 |
Q |
| |
|
| | ||||||||||||||||||||| | ||| ||| || |||||| ||||| || ||||||||| ||| ||||||||||||| | |||||||||| |
|
|
| T |
18847970 |
caagaaatgataggatttttaataatcttgtgaaagatcgtgatgaaattgttgatgacattaaggtgctttggtggaattgggcggttactagacttaa |
18848069 |
T |
|
| Q |
354 |
gagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt |
444 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
18848070 |
aagtcctccctgcctctattacgagtggtgttggaaccccaaggaatgcctattgagatagttggggtagttttagaggtgtccgggactt |
18848160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 120 - 449
Target Start/End: Complemental strand, 42111330 - 42111001
Alignment:
| Q |
120 |
gttgggaataaatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttg |
219 |
Q |
| |
|
|||||| || ||||| ||||| || ||| | || || ||||| ||||| ||||||| |||||| |||||||| || |||||||||||||||||| || |
|
|
| T |
42111330 |
gttggggattaattttattactcctcaaacgctcttccaacattttgagtgttggagtggggagattgggagactaaagcttcgtaaaggttattggatg |
42111231 |
T |
|
| Q |
220 |
atatggcatgcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaagg |
319 |
Q |
| |
|
|| |||||||||||| | ||| |||||||||| | |||||||||||||||||||| | | ||| |||||||| ||||| ||||| || ||||||| |
|
|
| T |
42111230 |
atttggcatgcggttctttggacgatttggaaaacgaggaatgataggatttttaattctattgtgaaagattatggggaaattgttgatgacattaagg |
42111131 |
T |
|
| Q |
320 |
tgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggg |
419 |
Q |
| |
|
|| | || ||||||||||||| | | |||||||||||||||| ||||||| || ||||||||||||||||| | |||||||| | || || |||| |
|
|
| T |
42111130 |
tgctctcttggaattgggcgattacaagacttaagagtcctcactgcctcttttttgagtggtgttggaaccccaaggaatgcttgctccgacaggtggg |
42111031 |
T |
|
| Q |
420 |
gaagttttagaggtgtctgggacttatggt |
449 |
Q |
| |
|
| ||||||||||||||| ||||||| |||| |
|
|
| T |
42111030 |
gtagttttagaggtgtccgggacttttggt |
42111001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 169 - 443
Target Start/End: Original strand, 55353392 - 55353666
Alignment:
| Q |
169 |
tgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatgatagga |
268 |
Q |
| |
|
|||||||||||||| || |||||| | || | || |||||||||||| || | ||||||||||| | |||||||||||||| || |||||||||||| |
|
|
| T |
55353392 |
tgttggaatggggagatcgggaggcgcaagttgcgaaaaggttattggatggtttggcatgcggtgatgtggtcgatttggaaagcgaggaatgatagga |
55353491 |
T |
|
| Q |
269 |
tttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcct |
368 |
Q |
| |
|
|||| ||| | | | | |||| || ||| || ||||| || || |||||||| |||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
55353492 |
ttttcaattctcttgtcaaggatgttgctgatatcgttgatgacatcaaggtgatctcgtggaattgggcgaattccagacttaaaagtcctccttgcct |
55353591 |
T |
|
| Q |
369 |
ctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggact |
443 |
Q |
| |
|
|| |||||| ||||| |||||||| | ||||| | ||| ||||| ||||| ||||| ||||||| | |||||| |
|
|
| T |
55353592 |
cttttacgattggtgctggaaccccaagaaatgccttttgcgataggtggggtagtttcagaggtggcagggact |
55353666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 64 - 444
Target Start/End: Original strand, 6231933 - 6232314
Alignment:
| Q |
64 |
catctttttctccattgtgtctggacatttaatgtttggtcgaaggttggtaggtagttgggaataaatttcattacaccgcaatctctttttcaacagt |
163 |
Q |
| |
|
||||| ||||| ||||||| ||||| ||||| || ||||||||||| ||| | | |||||| ||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
6231933 |
catctctttcttcattgtgagtggacgtttaaagtgtggtcgaaggtaggtggttggttggggataaatttcattacacctcaatccctttttcaacatt |
6232032 |
T |
|
| Q |
164 |
ttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatga |
263 |
Q |
| |
|
|||| |||||||||||||| ||||||||| | || ||||| ||||||||||||||||| ||||| || || ||||||||||||||||| || | ||||| |
|
|
| T |
6232033 |
ttgagtgttggaatggggagattgggaggcgtaagcttcggaaaggttattggttgatttggcacgcagtgttatggtcgatttggaaagcgagaaatga |
6232132 |
T |
|
| Q |
264 |
taggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagagtcctcct |
363 |
Q |
| |
|
|| ||| ||||| ||| | | ||||| ||||||| | || ||||| |||||||||||||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
6232133 |
tatgatctttaacaatatttccaaggattttggtgaattggtggaggatattaaggtgatttcgtggaattgggctaattctagacttaggagtcctcca |
6232232 |
T |
|
| Q |
364 |
tgcctctattacgagtggtgttggaaccctatcgaatgcttattgagat-agatggggaagttttagaggtgtctgggactt |
444 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||||||| | ||||| ||||||||||||||| ||||||| |
|
|
| T |
6232233 |
tgcctctattacgagtggtgctggaaccccaaggaatgcttattgagataatgtggggcagttttagaggtgtccgggactt |
6232314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 148 - 444
Target Start/End: Original strand, 48887990 - 48888286
Alignment:
| Q |
148 |
tctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgattt |
247 |
Q |
| |
|
||||||||| | || ||||| |||||||||||||| ||||||||| | || ||||| ||||| |||||| |||| ||||||| ||| |||||| |||||| |
|
|
| T |
48887990 |
tctctttttaatcattttgagtgttggaatggggagattgggaggcgaaagcttcgcaaagggtattggatgatttggcatgtggtcttatggacgattt |
48888089 |
T |
|
| Q |
248 |
ggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctag |
347 |
Q |
| |
|
|||| || ||||||||||| ||||| || || ||| || | |||||||| ||||| || ||||||||| | ||||||||||||| |||| |||| |
|
|
| T |
48888090 |
ggaaagctcggaatgatagaattttcaagtcactagtgaaagagttcggtgaaatggttgatgatattaaggtgctctcgtggaattgggtgaattctag |
48888189 |
T |
|
| Q |
348 |
acttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggactt |
444 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||| | ||||| |||| |||||||||| ||||||| |
|
|
| T |
48888190 |
actaaagagtcctccttgcctctattacgagtggtgttggaaccccaaggaatgtcttttgagattggtggggtagttctagaggtgtccgggactt |
48888286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 323 - 443
Target Start/End: Complemental strand, 19883586 - 19883466
Alignment:
| Q |
323 |
tttcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaa |
422 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||| ||||| | |
|
|
| T |
19883586 |
tttcgtggaattgggcggtgtctagactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagatagttggggta |
19883487 |
T |
|
| Q |
423 |
gttttagaggtgtctgggact |
443 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
19883486 |
gttttagaggtgtccgggact |
19883466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 316 - 444
Target Start/End: Original strand, 44346457 - 44346585
Alignment:
| Q |
316 |
aaggtgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagataga |
415 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||| |||||||||||||||| |||| ||||||| |||||||| | |||||| | ||| | ||| |
|
|
| T |
44346457 |
aaggtgctttcgtgtaattgggcgaattctagacttaaaagtcctccttgcctcttttacaagtggtgctggaaccccaaagaatgccttttgcgttagg |
44346556 |
T |
|
| Q |
416 |
tggggaagttttagaggtgtctgggactt |
444 |
Q |
| |
|
||||||||||| |||||||| ||||||| |
|
|
| T |
44346557 |
tggggaagtttcagaggtgttagggactt |
44346585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 19883654 - 19883600
Alignment:
| Q |
136 |
attacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattggga |
190 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
19883654 |
attacacctcaatctctgtttcaacattttgaatgttggagtggggagattggga |
19883600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 130 - 413
Target Start/End: Original strand, 38970840 - 38971123
Alignment:
| Q |
130 |
aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg |
229 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||| |||||||||||||| ||||||||| | |||||||| ||||||||||||||||| ||||| | |
|
|
| T |
38970840 |
aatttcattacacctcaatctctatttcatcattttgagtgttggaatggggagattgggaggcgtaaacttcggaaaggttattggttgatttggcacg |
38970939 |
T |
|
| Q |
230 |
cggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtg |
329 |
Q |
| |
|
|||| |||||| ||||||||| | |||||||||||||||| || ||| ||||| ||||| ||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38970940 |
cggtgttatggatgatttggaaagagaggaatgataggattttcaaaaatcaaatgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtg |
38971039 |
T |
|
| Q |
330 |
gaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagata |
413 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
38971040 |
gaattgggcaaattctagacttaaaagtcctcattgcctctattacgagtggtgttggaaccccaaagaatgcttattgagata |
38971123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 9017719 - 9017570
Alignment:
| Q |
130 |
aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg |
229 |
Q |
| |
|
||||||| | |||| |||||| | |||||||| ||||||||||||| ||| || |||| || || | |||||||||||| ||||||||| | ||||||| |
|
|
| T |
9017719 |
aatttcaatgcaccccaatctttgtttcaacaatttgaatgttggagtggtgatattgagaagaaaagacttcgtaaagggtattggttggtgtggcatg |
9017620 |
T |
|
| Q |
230 |
cggttttatggtcgatttggaaggcccggaatgataggatttttaataat |
279 |
Q |
| |
|
| | | ||| ||||||||| | |||||||||| |||||||||||| |
|
|
| T |
9017619 |
cctctctttggatgatttggaaagtgtggaatgatagaatttttaataat |
9017570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 16080465 - 16080546
Alignment:
| Q |
352 |
aagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggt |
433 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| | ||||| || ||||| | ||||| |||||||||||| |
|
|
| T |
16080465 |
aagagtcctccttgcctcttttatgagtggtgttggaaccccaaggaatgtttgatgagaaaattggggtagttttagaggt |
16080546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 64 - 444
Target Start/End: Complemental strand, 381043 - 380662
Alignment:
| Q |
64 |
catctttttctccattgtgtctggacatttaatgtttggtcgaaggttggtaggtagttgggaataaatttcattacaccgcaatctctttttcaacagt |
163 |
Q |
| |
|
||||| ||||| ||||||| ||||| |||| || ||||||||||| ||| | | |||||| ||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
381043 |
catctctttcttcattgtgagtggacgtttatagtgtggtcgaaggtaggtggttggttggggataaatttcattacacctcaatccctttttcaacatt |
380944 |
T |
|
| Q |
164 |
ttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatga |
263 |
Q |
| |
|
|||| |||||||||||||| ||||||||| | || | ||| ||||||||||||||||| ||||| || || ||||||||||||||||| | | ||||| |
|
|
| T |
380943 |
ttgagtgttggaatggggagattgggaggcgtaagcctcggaaaggttattggttgatttggcacgcagtgttatggtcgatttggaaagtgagaaatga |
380844 |
T |
|
| Q |
264 |
taggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagagtcctcct |
363 |
Q |
| |
|
|||||| ||||| ||||| | ||||| ||||||| | || ||||| |||||||||||||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
380843 |
taggatctttaacaatttttccaaggattttggtgaattggtggaggatattaaggtgatttcgtggaattgggctaattctagacttaggagtcctcca |
380744 |
T |
|
| Q |
364 |
tgcctctattacgagtggtgttggaaccctatcgaatgcttattgagat-agatggggaagttttagaggtgtctgggactt |
444 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||||||| | ||||| ||||||||||||||| ||||||| |
|
|
| T |
380743 |
tgcctctattacgagtggtgctggaaccccaaggaatgcttattgagataacgtggggcagttttagaggtgtccgggactt |
380662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 157 - 449
Target Start/End: Original strand, 997 - 1289
Alignment:
| Q |
157 |
caacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggccc |
256 |
Q |
| |
|
||||| ||||| ||||||| |||||| |||||||| || || ||||||||||||||| |||| |||||||||||| | ||| |||| ||||| | |
|
|
| T |
997 |
caacattttgagtgttggagtggggagattgggagactaaagctccgtaaaggttattggatgatttggcatgcggttctttggacgatctggaaaacga |
1096 |
T |
|
| Q |
257 |
ggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagag |
356 |
Q |
| |
|
|||||||||||||||||||| | | ||| |||||||| ||||| ||||| || ||||||||| | | ||||||||||||| | | ||||||||||| |
|
|
| T |
1097 |
ggaatgataggatttttaattctattgtgaaagattatggggaaattgttgatgacattaaggtgctcccttggaattgggcgattacaagacttaagag |
1196 |
T |
|
| Q |
357 |
tcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttagaggtgtctgggacttatggt |
449 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||| || | |||||||| | || || ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
1197 |
tcctccctgcctcttttatgagtggtgttggaagcccaaggaatgcttgctccgacaggtggggtagttttagaggtgtccgggacttttggt |
1289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 204 - 444
Target Start/End: Original strand, 51361138 - 51361378
Alignment:
| Q |
204 |
taaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaata |
303 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||| ||| | ||| || |||||||||||||||||||||| | | | ||| | |||||||| |
|
|
| T |
51361138 |
taaagggtattggttgacttggcatgcggtattatggatgatatagaaagcaaggaatgataggatttttaataagattgttaaagatcacggtgaaatt |
51361237 |
T |
|
| Q |
304 |
gttgaggaaattaaggtgatttcgtggaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgct |
403 |
Q |
| |
|
||| | || ||||||||| ||| |||||||||| || | ||||||| || ||| |||| ||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
51361238 |
gtttatgacattaaggtgcttttgtggaattggacggttactagactcaaaagttctccctgcctctattatgagtggtgttggaaccccaaggaatgcc |
51361337 |
T |
|
| Q |
404 |
tattgagatagatggggaagttttagaggtgtctgggactt |
444 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
51361338 |
tattgagatagttggggtagttttagaggtgtcagggactt |
51361378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 449
Target Start/End: Original strand, 13154799 - 13155117
Alignment:
| Q |
130 |
aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg |
229 |
Q |
| |
|
||||| ||||| || |||||| | |||||||| ||||||||||||| ||||| ||||||| || | ||| | ||||| |||||| || | ||||||| |
|
|
| T |
13154799 |
aattttattactcctcaatctttgtttcaacattttgaatgttggagcggggagattgggaagaaaaggctttgcaaaggctattggatggtttggcatg |
13154898 |
T |
|
| Q |
230 |
cggttttatggtcgatttggaaggcccggaatgataggatttttaataatttaatgagggattatggtgaaatagttgaggaaattaaggtgatttcgtg |
329 |
Q |
| |
|
| || ||||| |||||||||| || | || |||||||||||||| ||| | ||| || | || ||||| ||||| || |||||||| | || || |
|
|
| T |
13154899 |
ctgtcctatggacgatttggaaagcgccaaacgataggatttttaacaatcttgtgaaagaatcgggagaaattgttgatgacattaaggtactctcttg |
13154998 |
T |
|
| Q |
330 |
gaattgggcgaatgctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagatagatggggaagttttag |
429 |
Q |
| |
|
||||| | || ||||| | ||||||||| |||||||||||||||||||||||| |||||||| ||||| ||| ||||| || | ||| || ||||| |
|
|
| T |
13154999 |
gaattagacgctatctagattaaagagtcctacttgcctctattacgagtggtgtttgaaccctaaagaatgtttactgagaaagctcgggtag-tttag |
13155097 |
T |
|
| Q |
430 |
aggtgtctgggacttatggt |
449 |
Q |
| |
|
|||||| |||||||| |||| |
|
|
| T |
13155098 |
aggtgtttgggacttttggt |
13155117 |
T |
|
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