View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_30 (Length: 269)
Name: NF0424_low_30
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 1221474 - 1221304
Alignment:
| Q |
36 |
ctatatatgaatgtttattgttatgagcaaagtttgctcccnnnnnnnnnngtctatttggcattttattactattccatattattaatgactacccaac |
135 |
Q |
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| T |
1221474 |
ctatatatgaatgtttattgttatgagcaaagtttgctccctttttttt--gtctatttggcattttattactattcgatattattaatgactacccaac |
1221377 |
T |
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| Q |
136 |
aatgatcgtcttttcttttatacaaactcaacaatgatcattatagaggatggtatgcaacctttatcattat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1221376 |
aatgatcgtcttttcttttatacaaactcaacaatgatcattatagaggatggtatgcaacctttatcattat |
1221304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 41987108 - 41987219
Alignment:
| Q |
97 |
cattttattactattccatattattaatgactacccaacaatgatcgtcttttcttttatacaaactcaacaatgatcattatagaggatggtatgcaac |
196 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41987108 |
cattttattactattcgatattattaatgactacccaacaatgatcgtcttttcttttatacaaactcaacaatgatcattatagaggatggtatgcaac |
41987207 |
T |
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| Q |
197 |
ctttatcattat |
208 |
Q |
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|||||||||||| |
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| T |
41987208 |
ctttatcattat |
41987219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 41986963 - 41987002
Alignment:
| Q |
36 |
ctatatatgaatgtttattgttatgagcaaagtttgctccc |
76 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41986963 |
ctatatatgaatgtttattgttatgagcaaa-tttgctccc |
41987002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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