View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_35 (Length: 250)
Name: NF0424_low_35
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 55 - 231
Target Start/End: Original strand, 42169655 - 42169831
Alignment:
| Q |
55 |
agaaataacttatagataagtgaatatcatgataagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat |
154 |
Q |
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| T |
42169655 |
agaaataacttatagataagtgaatatcatgatgagtccttatgctatgaggctaattaagttgtttatccaaacagggcctacgtagggtaatggtaat |
42169754 |
T |
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| Q |
155 |
ctctaacagaaattacattttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt |
231 |
Q |
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| T |
42169755 |
ctctaacagaaattacatgttcacagggttcgtaaaggagggaatatggcacaaatttcaaaatcttgtgatgatgt |
42169831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42169516 - 42169572
Alignment:
| Q |
1 |
aattcacttattcaagcttatctagtgacataagcacttttataaccgtttatgaga |
57 |
Q |
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| T |
42169516 |
aattcacttattcaagcttatctagtgacataagcacttttataaccgtttatgaga |
42169572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 48064241 - 48064182
Alignment:
| Q |
80 |
atcatgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta |
137 |
Q |
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| T |
48064241 |
atcatgataagggcttatgctataagctgcaaattaagttgtttatccaaacatggccta |
48064182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 5620261 - 5620290
Alignment:
| Q |
108 |
taattaagttgtttatccaaacagggccta |
137 |
Q |
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| T |
5620261 |
taattaagttgtttatccaaacagggccta |
5620290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 17823068 - 17823012
Alignment:
| Q |
83 |
atgataagtccttatgctatgag--gctaattaagttgtttatccaaacagggccta |
137 |
Q |
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|
|||||||| |||||||||||||| || ||||||| |||||||||||||| |||||| |
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| T |
17823068 |
atgataagcccttatgctatgagctgcaaattaagctgtttatccaaacaaggccta |
17823012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 30090160 - 30090132
Alignment:
| Q |
108 |
taattaagttgtttatccaaacagggcct |
136 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
30090160 |
taattaagttgtttatccaaacagggcct |
30090132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 14955625 - 14955597
Alignment:
| Q |
109 |
aattaagttgtttatccaaacagggccta |
137 |
Q |
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|
| T |
14955625 |
aattaagttgtttatccaaacagggccta |
14955597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 37308232 - 37308260
Alignment:
| Q |
108 |
taattaagttgtttatccaaacagggcct |
136 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
37308232 |
taattaagttgtttatccaaacagggcct |
37308260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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