View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_36 (Length: 248)
Name: NF0424_low_36
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28575764 - 28575984
Alignment:
| Q |
1 |
tctcaccttgtgcatcattgtcaaaatttgacagcatatgataagctgatgcaattgtgaatttcccattagaagaacccgaccacatttgcttgtcatt |
100 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28575764 |
tctcatcttgtgcatcattgtcaaattttgacagcatatgataagctgatgcaattgtgaattttccattagaagaacccgaccacatttgcttgtcatt |
28575863 |
T |
|
| Q |
101 |
tccatcattctcatccggcaccgcaatggtcatgatcctctgaacaacatcataaggcaaccattgattcaacaattcagagttccaattaccattaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
28575864 |
tccatcattctcatccggcaccgcaatggtcatgatcctctgaacaacatcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaa |
28575963 |
T |
|
| Q |
201 |
tcaaccagatctgcaaccttc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
28575964 |
tcaaccagatctgcaaccttc |
28575984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16236680 - 16236460
Alignment:
| Q |
1 |
tctcaccttgtgcatcattgtcaaaatttgacagcatatgataagctgatgcaattgtgaatttcccattagaagaacccgaccacatttgcttgtcatt |
100 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16236680 |
tctcatcttgtgcatcattgtcaaattttgacagcatatgataagctgatgcaattgtgaattttccattagaagaacccgaccacatttgcttgtcatt |
16236581 |
T |
|
| Q |
101 |
tccatcattctcatccggcaccgcaatggtcatgatcctctgaacaacatcataaggcaaccattgattcaacaattcagagttccaattaccattaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
16236580 |
tccatcattctcatccggcaccgcaatggtcatgatcctctgaacaacatcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaa |
16236481 |
T |
|
| Q |
201 |
tcaaccagatctgcaaccttc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
16236480 |
tcaaccagatctgcaaccttc |
16236460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32714672 - 32714892
Alignment:
| Q |
1 |
tctcaccttgtgcatcattgtcaaaatttgacagcatatgataagctgatgcaattgtgaatttcccattagaagaacccgaccacatttgcttgtcatt |
100 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32714672 |
tctcatcttgtgcatcattgtcaaattttgacagcatatgataagctgatgcaattgtgaattttccattagaagaacccgaccacatttgcttgtcatt |
32714771 |
T |
|
| Q |
101 |
tccatcattctcatccggcaccgcaatggtcatgatcctctgaacaacatcataaggcaaccattgattcaacaattcagagttccaattaccattaaaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
32714772 |
tccatcattctcatccggcaccgcaatggtcatgatcctctgaacaacatcataaggcaaccattgattcaacaattcaaaattccaattaccataaaaa |
32714871 |
T |
|
| Q |
201 |
tcaaccagatctgcaaccttc |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
32714872 |
tcaaccagatctgcaaccttc |
32714892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 158823 - 158745
Alignment:
| Q |
16 |
cattgtcaaaatttgacagcatatgataagctgatgcaattgtgaatttcccattagaagaacccgaccacatttgctt |
94 |
Q |
| |
|
|||| ||||| ||||||| || || |||| ||| |||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
158823 |
cattatcaaagtttgacatcacattataaattgaagcaattgtgaattttccattagtagaacccgaccacatttgctt |
158745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 18568087 - 18567949
Alignment:
| Q |
82 |
accacatttgcttgtcatttccatcattctcatccggcaccgcaatggtcatgatcctctgaacaacatcataaggcaaccattgattcaacaattcaga |
181 |
Q |
| |
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|||||||||| || | ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || | |
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| T |
18568087 |
accacatttgtttatgattaccatcattctcattacgcaccgcaatggtcatgatcctttgaacaacatcataaggcaactattgattcaacatatccaa |
18567988 |
T |
|
| Q |
182 |
gttccaattaccattaaaatcaaccagatctgcaacctt |
220 |
Q |
| |
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|||| ||| ||||| |||||||||| ||||||||||| |
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| T |
18567987 |
attccgatttccattgaaatcaaccaactctgcaacctt |
18567949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20633956 - 20634018
Alignment:
| Q |
1 |
tctcaccttgtgcatcattgtcaaaatttgacagcatatgataagctgatgcaattgtgaatt |
63 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20633956 |
tctcatcttgtgcatcattgtcaaaatttgacagcatatgataagctgatgcaattgtgaatt |
20634018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38836439 - 38836496
Alignment:
| Q |
1 |
tctcaccttgtgcatcattgtcaaaatttgacagcatatgataagctgatgcaattgt |
58 |
Q |
| |
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||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38836439 |
tctcatcttgtgcagcattgtcaaaatttgacagtatatgataagctgatgcaattgt |
38836496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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