View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0424_low_37 (Length: 243)

Name: NF0424_low_37
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0424_low_37
NF0424_low_37
[»] chr7 (2 HSPs)
chr7 (1-243)||(24907646-24907882)
chr7 (6-243)||(24889944-24890181)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 24907646 - 24907882
Alignment:
Q  1 atccaacaacataagaaataagattcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaatgataaatacatcata 100  Q
    ||||||||| ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  24907646 atccaacaatataagaaataagattcatcataatgaat------catgattccctttggaaccacatgtatcctaataactaaacgataaatacatcata 24907739  T
Q  101 taccagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907740 taccagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttga 24907839  T
Q  201 catcgattttcatattttttgtgcttgattacttgagatgacg 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24907840 catcgattttcatattttttgtgcttgattacttgagatgacg 24907882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 24889944 - 24890181
Alignment:
Q  6 acaacataagaaataagattcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaat-gataaatacatcatatacc 104  Q
    |||||||||||||||||||||||||||||  ||||| ||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||| |||||    
T  24889944 acaacataagaaataagattcatcataatatattta-cccattattccctttggaaccacatgtatcctaacaacaaaaaagataaatacatcacatacc 24890042  T
Q  105 agaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatc 204  Q
    | ||  ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  24890043 aaaagtatgaacccaacatcatttgcaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgatgtc 24890142  T
Q  205 gattttcatattttttgtgcttgattacttgagatgacg 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24890143 gattttcatattttttgtgcttgattacttgagatgacg 24890181  T

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