View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_5 (Length: 421)
Name: NF0424_low_5
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 6602480 - 6602205
Alignment:
| Q |
29 |
aagttctaattaattttgtcaacatatatagtttcaactcatggagtgtgtctataacaaacatgtttttgttttcatgttttgtcttgtgtttcttact |
128 |
Q |
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| T |
6602480 |
aagttctaattaagtttgtcaacata----gtttcagctcatggagtgtgtctctaacaaacatgtttttattttcatgttttgtcttgtgtttcttact |
6602385 |
T |
|
| Q |
129 |
ccacttgtgtgctctcaactatattacaatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602384 |
ccacttgtgtgctctcaactatattacaatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatg |
6602285 |
T |
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| Q |
229 |
attctaggattgctgcttctctcttgcgccttcatttccatgattgttttgttaatgtaattaagctctctcaattgttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602284 |
attctaggattgctgcttctctcttgcgccttcatttccatgattgttttgttaatgtaattaagctctctcaattgttg |
6602205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 56 - 293
Target Start/End: Complemental strand, 6609972 - 6609735
Alignment:
| Q |
56 |
atagtttcaactcatggagtgtgtctataacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccacttgtgtgctctcaactatattac |
155 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
6609972 |
atagtttcaactcatggagtgtgtctctaacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccaaatgtgtgctctcaactctattac |
6609873 |
T |
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| Q |
156 |
aatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgctgcttctctcttgc |
255 |
Q |
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| T |
6609872 |
aacttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgctgcttctctcttgc |
6609773 |
T |
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| Q |
256 |
gccttcatttccatgattgttttgttaatgtaattaag |
293 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
6609772 |
gccttcatttccatgattgttttgtcaatgtaattaag |
6609735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 413
Target Start/End: Complemental strand, 6602130 - 6602100
Alignment:
| Q |
383 |
gtgttacatagggatgtgatggatctgtgct |
413 |
Q |
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| T |
6602130 |
gtgttacatagggatgtgatggatctgtgct |
6602100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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