View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0424_low_6 (Length: 420)
Name: NF0424_low_6
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 200 - 350
Target Start/End: Complemental strand, 1052350 - 1052199
Alignment:
| Q |
200 |
tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgt-tattaattgctcatttgataaaa |
298 |
Q |
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| T |
1052350 |
tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtcaattaattgctcattagataaaa |
1052251 |
T |
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| Q |
299 |
ttaaatacatactagaattagaaactcttccaacatgccaaatctgacagaa |
350 |
Q |
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| T |
1052250 |
ttaaatacatactagaattagaaactcttccaacatgccaaatctgacagaa |
1052199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 1052937 - 1052870
Alignment:
| Q |
31 |
cctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac |
98 |
Q |
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| T |
1052937 |
cctccaatttgtggtgtgagtagtttgtttgttgaagatattggtgcttgcccatttggttgacaaac |
1052870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 1046277 - 1046210
Alignment:
| Q |
31 |
cctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac |
98 |
Q |
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| T |
1046277 |
cctccaattcgtggtgtgagtagtttgtctgtagaagatattggtgcttgtccatttggttgataaac |
1046210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 1032926 - 1032876
Alignment:
| Q |
300 |
taaatacatactagaattagaaactcttccaacatgccaaatctgacagaa |
350 |
Q |
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| T |
1032926 |
taaatacatactagaattagaaactcttccaacatgccaaatctgacagaa |
1032876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 341
Target Start/End: Complemental strand, 1046130 - 1045975
Alignment:
| Q |
184 |
taattaaactagtgaatataaaataagtatcat-ctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtta-ttaa |
281 |
Q |
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|||||||||||||||| ||||| || |||||| || ||||||||||| ||||| |||||||| |||||| ||||||| | |||||| ||||| |||| |
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| T |
1046130 |
taattaaactagtgaacataaatcaa-tatcattctgtaacaaaaattcaattcctacctaaaaa-aatact-gaaaaatca-aaaaatttgttagttaa |
1046035 |
T |
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| Q |
282 |
ttgctcatttgataaaattaaatacatactagaattagaaactcttccaacatgccaaat |
341 |
Q |
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| T |
1046034 |
ttgctaatttgattaaactaaatgcataccagaattagaaaccctaccaacaagccaaat |
1045975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 1043321 - 1043275
Alignment:
| Q |
313 |
gaattagaaactcttccaacatgccaaatctgacagaataatctacc |
359 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||| |||| |
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| T |
1043321 |
gaatttgaaactcttccaacatgccaaatctgacagaaaaatatacc |
1043275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 1071071 - 1071009
Alignment:
| Q |
36 |
aatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac |
98 |
Q |
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| T |
1071071 |
aatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccatttggctgataaac |
1071009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 1049625 - 1049579
Alignment:
| Q |
313 |
gaattagaaactcttccaacatgccaaatctgacagaataatctacc |
359 |
Q |
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||||| ||||||||||||||||||||||| |||||||| ||| |||| |
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| T |
1049625 |
gaatttgaaactcttccaacatgccaaatttgacagaaaaatatacc |
1049579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 1065080 - 1065046
Alignment:
| Q |
313 |
gaattagaaactcttccaacatgccaaatctgaca |
347 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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| T |
1065080 |
gaatcagaaactcttccaacatgccaaatctgaca |
1065046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 1058052 - 1058007
Alignment:
| Q |
305 |
acatactagaattagaaactcttccaacatgccaaatctgacagaa |
350 |
Q |
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| T |
1058052 |
acataccagtatcagaaactcttccaacgtgccaaatctgacagaa |
1058007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 1070392 - 1070347
Alignment:
| Q |
305 |
acatactagaattagaaactcttccaacatgccaaatctgacagaa |
350 |
Q |
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| T |
1070392 |
acataccagtatcagaaactcttccaacatgccaaatttgacagaa |
1070347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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