View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0424_low_7 (Length: 384)

Name: NF0424_low_7
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0424_low_7
NF0424_low_7
[»] chr2 (2 HSPs)
chr2 (30-376)||(45245189-45245535)
chr2 (74-122)||(44575643-44575691)
[»] chr3 (5 HSPs)
chr3 (56-334)||(51121023-51121305)
chr3 (30-184)||(51113885-51114039)
chr3 (59-192)||(514861-514994)
chr3 (56-101)||(13470862-13470907)
chr3 (30-102)||(51764544-51764616)
[»] chr4 (22 HSPs)
chr4 (56-193)||(55505235-55505372)
chr4 (47-119)||(546819-546891)
chr4 (56-120)||(553384-553448)
chr4 (73-201)||(570175-570303)
chr4 (58-193)||(8187223-8187358)
chr4 (156-201)||(659532-659577)
chr4 (57-189)||(12121588-12121720)
chr4 (56-182)||(1489491-1489617)
chr4 (59-128)||(8184163-8184232)
chr4 (35-104)||(53761878-53761947)
chr4 (58-154)||(1545644-1545740)
chr4 (56-123)||(1524613-1524680)
chr4 (61-122)||(558401-558462)
chr4 (67-192)||(640748-640873)
chr4 (57-182)||(1513535-1513660)
chr4 (57-121)||(644735-644799)
chr4 (49-121)||(1537890-1537962)
chr4 (230-301)||(1553051-1553122)
chr4 (58-193)||(7226015-7226150)
chr4 (134-192)||(1600364-1600422)
chr4 (56-104)||(566110-566158)
chr4 (69-121)||(1508146-1508198)
[»] chr6 (21 HSPs)
chr6 (32-104)||(6603308-6603380)
chr6 (32-123)||(6402762-6402853)
chr6 (44-120)||(14820598-14820674)
chr6 (58-113)||(10579869-10579924)
chr6 (56-120)||(6394769-6394833)
chr6 (32-102)||(7119080-7119150)
chr6 (32-102)||(7131558-7131628)
chr6 (30-104)||(19632360-19632434)
chr6 (68-105)||(6589465-6589502)
chr6 (68-113)||(7994324-7994369)
chr6 (56-101)||(14818306-14818351)
chr6 (56-104)||(6415887-6415935)
chr6 (56-104)||(6585367-6585415)
chr6 (79-167)||(12102164-12102252)
chr6 (56-102)||(6432084-6432130)
chr6 (44-102)||(6594724-6594782)
chr6 (56-194)||(9411186-9411324)
chr6 (70-120)||(28934954-28935004)
chr6 (67-104)||(6426432-6426469)
chr6 (59-123)||(491395-491459)
chr6 (74-106)||(6597040-6597072)
[»] chr8 (6 HSPs)
chr8 (30-193)||(34936267-34936430)
chr8 (230-284)||(18315518-18315572)
chr8 (73-130)||(21235453-21235510)
chr8 (49-116)||(44736444-44736511)
chr8 (67-104)||(27922429-27922466)
chr8 (247-319)||(27922208-27922280)
[»] chr1 (3 HSPs)
chr1 (31-120)||(7554393-7554482)
chr1 (56-122)||(29659026-29659092)
chr1 (56-122)||(29719053-29719119)
[»] chr7 (4 HSPs)
chr7 (49-120)||(15092274-15092345)
chr7 (56-97)||(10614521-10614562)
chr7 (56-104)||(10170211-10170259)
chr7 (56-104)||(10177736-10177784)
[»] scaffold0041 (1 HSPs)
scaffold0041 (44-118)||(39091-39165)
[»] chr5 (3 HSPs)
chr5 (56-97)||(17205527-17205568)
chr5 (67-119)||(32267381-32267433)
chr5 (56-120)||(38267686-38267750)
[»] scaffold0295 (1 HSPs)
scaffold0295 (73-105)||(771-803)


Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 30 - 376
Target Start/End: Original strand, 45245189 - 45245535
Alignment:
Q  30 gcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45245189 gcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttgaggcactgc 45245288  T
Q  130 tttcaagtgcatgctaatgttattgtctcgatggtattttcaaggccatcgttgaaaaagataaatgttccagttctttatcatatcagtcaacaagagc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45245289 tttcaagtgcatgctaatgttattgtctcgatggtattttcaaggccatcgttgaaaaagataaatgttccagttctttatcatatcagtcaacaagagc 45245388  T
Q  230 gggaactcttgtcgcgccaaggatgccttgtttgctagcattctgaaactgctctacttaagtttgaactttgaaatgtgagatgttttttgttttcgaa 329  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  45245389 gggaactcttgtcgcgtcaaggatgccttgtttgctagcattctgaaactgctctacttaagtttgaactttgaagtgtaagatgttttttgttttcgaa 45245488  T
Q  330 tttacttcttttagaatacttcttgatgtaacacacttttctctgct 376  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  45245489 tttacttcttttagaatacttcttgttgtaacacacttttctctgct 45245535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 44575643 - 44575691
Alignment:
Q  74 tgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgag 122  Q
    |||| |||||||||||||||||||||||||  | |||| ||||||||||    
T  44575643 tgaatcatgtggtagaaaactgcacacaaccgagagagctcaatttgag 44575691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 334
Target Start/End: Original strand, 51121023 - 51121305
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgt 155  Q
    |||||||| | || ||||||||||||||||||||||||||||||||| | | || |||||| |||||| | |||| | |||| |||||| || || |||     
T  51121023 atgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttgaggtattgctataaagtccatgctgattttgttgc 51121122  T
Q  156 ctcgatggtattttcaaggccatcgttgaaaaagataaatgttccagttct-ttatcatatcagtcaacaagagcgggaactcttgtcgcg---ccaagg 251  Q
    ||| || || ||||||||| ||||||||| |||||||  ||||||  |||| ||||||| |||   |   |||| |||||||||| |||||    || ||    
T  51121123 ctcaatagtcttttcaaggtcatcgttgagaaagatatttgttcc-tttctcttatcatttcaaagatagagagagggaactcttttcgcgtcatcatgg 51121221  T
Q  252 atgccttgtttgctagcattctgaaactgctctacttaagtttgaac-tttgaaatgtgagatgttttttgttttcgaatttac 334  Q
     || ||||||||||||||||||||  |||||||    |||||||||| |||||||||| ||||||||||||||||| |||||||    
T  51121222 ttgtcttgtttgctagcattctgaggctgctctgtggaagtttgaacttttgaaatgtaagatgttttttgttttcaaatttac 51121305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 51113885 - 51114039
Alignment:
Q  30 gcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgc 129  Q
    |||||| ||| ||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||| | |||||| ||||| | |   ||     
T  51113885 gcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgt 51113984  T
Q  130 tttcaagtgcatgctaatgttattgtctcgatggtattttcaaggccatcgttga 184  Q
    ||| |||||||||||||| || ||| ||| ||| |||||||||||||||| ||||    
T  51113985 tttaaagtgcatgctaattttgttgcctcaatgatattttcaaggccatcattga 51114039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 514861 - 514994
Alignment:
Q  59 tcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtctc 158  Q
    ||||||| | ||||||||| ||||||||  |||||||||||| ||| | |||||||||||| ||    ||   | ||||||||  ||||||| ||| | |    
T  514861 tcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttgtaataaagtgcattataatgttgttgcccc 514960  T
Q  159 gatggtattttcaaggccatcgttgaaaaagata 192  Q
     |||||||||||||||||||| |||| |||||||    
T  514961 aatggtattttcaaggccatcattgagaaagata 514994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 13470862 - 13470907
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacaca 101  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||    
T  13470862 atgtcacagaagagggagtgaaacatgtggtagagaactgcacaca 13470907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 51764544 - 51764616
Alignment:
Q  30 gcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaa 102  Q
    |||||||||| || || | ||| || ||||||  || |||||||||||||||||||| |||||||||||||||    
T  51764544 gcaactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggttgaaaactgcacacaa 51764616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 55505235 - 55505372
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgt 155  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||||||| | ||||||||| ||||     ||   | |||||||| ||| |||| |||     
T  55505235 atgtcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttga 55505334  T
Q  156 ctcgatggtattttcaaggccatcgttgaaaaagataa 193  Q
    ||| |||||||||||||||||||| |||| ||||||||    
T  55505335 ctcaatggtattttcaaggccatcattgagaaagataa 55505372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 546891 - 546819
Alignment:
Q  47 aatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaattt 119  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||||||| |||| | ||||||||||||    
T  546891 aatgttttcatgtcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaattt 546819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 553448 - 553384
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttg 120  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||||    
T  553448 atgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttg 553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 570303 - 570175
Alignment:
Q  73 gtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtctcgatggtattttcaa 172  Q
    ||||| |||||||||||||||||||||||||| |  ||||||||||||| | |||||| | ||||||||   ||| || ||| ||||||| |||| ||||    
T  570303 gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaa 570204  T
Q  173 ggccatcgttgaaaaagataaatgttcca 201  Q
    | ||||| |||| |||||||| |||||||    
T  570203 gaccatcattgagaaagataactgttcca 570175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 193
Target Start/End: Original strand, 8187223 - 8187358
Alignment:
Q  58 gtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtct 157  Q
    |||||||  ||||||||||   |||||||| |||||||||| ||||| |||||  ||||| |||||| ||||| | | |||||| || ||||| ||| ||    
T  8187223 gtcacagggaagggagtgatggatgtggtaaaaaactgcacgcaactgacagaagtcaatctgaggcgctgctataatgtgcatcctgatgttgttgact 8187322  T
Q  158 cgatggtattttcaaggccatcgttgaaaaagataa 193  Q
    ||||| ||||||||||||||||| ||| ||||||||    
T  8187323 cgatgatattttcaaggccatcgctgagaaagataa 8187358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 659577 - 659532
Alignment:
Q  156 ctcgatggtattttcaaggccatcgttgaaaaagataaatgttcca 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  659577 ctcgatggtattttcaaggccatcgttgaaaaagataattgttcca 659532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 12121588 - 12121720
Alignment:
Q  57 tgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtc 156  Q
    ||||||||| | ||||||||| |||||||||||||| ||||||||||| | ||||||| ||||||   | ||  |||||||||||  | ||||| ||| |    
T  12121588 tgtcacagagatgggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcc 12121687  T
Q  157 tcgatggtattttcaaggccatcgttgaaaaag 189  Q
    ||  || |||||||||||||||| |||| ||||    
T  12121688 tcattgatattttcaaggccatcattgagaaag 12121720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 1489491 - 1489617
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgt 155  Q
    |||||||||| ||||||||||| |||||| ||||||| ||| ||||||| | ||||||||||||||     ||   ||||||||||| | ||||| |||     
T  1489491 atgtcacagagaagggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttgaaaatgtgtggtcaagtgcatgatgatgttcttgc 1489590  T
Q  156 ctcgatggtattttcaaggccatcgtt 182  Q
    |||  || |||||||||||||||||||    
T  1489591 ctcattgatattttcaaggccatcgtt 1489617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 8184163 - 8184232
Alignment:
Q  59 tcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactg 128  Q
    |||||||| |||||||||| |||||| ||||||| ||||||||||| | || ||||||||||||| ||||    
T  8184163 tcacagatgagggagtgaagcatgtgctagaaaattgcacacaactgaaagtgatcaatttgaggaactg 8184232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 53761878 - 53761947
Alignment:
Q  35 tattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    ||||| ||||| | ||| || ||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  53761878 tattactgaaacattgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcacacaact 53761947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 1545740 - 1545644
Alignment:
Q  58 gtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattg 154  Q
    |||||| | |||||||||||| ||| |||| |||||||||||||||| | || |||||||||||||   ||   | |||||||||||||||||||||    
T  1545740 gtcacatagaagggagtgaaagatgcggtaaaaaactgcacacaactaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttattg 1545644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 1524613 - 1524680
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgagg 123  Q
    |||||||||| | |||||||||  ||||| ||||||||||||||||||| | |||||| |||||||||    
T  1524613 atgtcacagagaggggagtgaattatgtgatagaaaactgcacacaactgagagagattaatttgagg 1524680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 558462 - 558401
Alignment:
Q  61 acagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgag 122  Q
    |||||||| |||||||| |||||| ||||||||||||||||| | | ||| |||||||||||    
T  558462 acagataaaggagtgaagcatgtgctagaaaactgcacacaaatgagagaaatcaatttgag 558401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 192
Target Start/End: Complemental strand, 640873 - 640748
Alignment:
Q  67 aagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtctcgatggtat 166  Q
    ||||||||||| ||||||||||||||||||| | || | | |||| ||||||| | |   ||   | ||||| ||||||||||  ||| ||| |||||||    
T  640873 aagggagtgaatcatgtggtagaaaactgcaaagaattaagagaggtcaatttaaagggttgtaataaagtgaatgctaatgtcgttgactcaatggtat 640774  T
Q  167 tttcaaggccatcgttgaaaaagata 192  Q
    ||||||||||||| |||| |||||||    
T  640773 tttcaaggccatcattgagaaagata 640748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 1513535 - 1513660
Alignment:
Q  57 tgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtc 156  Q
    ||||||||| | ||||||||| | |||| ||||||| ||||||||||| | ||||||||||||||   | || | | ||||| ||| | ||||| ||| |    
T  1513535 tgtcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatattgttctaaagtgaatggtgatgttcttgcc 1513634  T
Q  157 tcgatggtattttcaaggccatcgtt 182  Q
    ||  || |||||||||||||||||||    
T  1513635 tcattgatattttcaaggccatcgtt 1513660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 644799 - 644735
Alignment:
Q  57 tgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttga 121  Q
    |||||| || || ||||||||||||||||| ||||| ||||||||||| | ||||||| ||||||    
T  644799 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttga 644735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 1537890 - 1537962
Alignment:
Q  49 tgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttga 121  Q
    ||||||| ||||||| | |||||||||||  ||||| ||||||| ||||| ||||| | ||||||||||||||    
T  1537890 tgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttga 1537962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 1553051 - 1553122
Alignment:
Q  230 gggaactcttgtcgcgccaaggatgccttgtttgctagcattctgaaactgctctacttaagtttgaacttt 301  Q
    |||||||||| ||||  |||||||| |||||||||||| ||||  ||||| |||| || |||||||||||||    
T  1553051 gggaactcttctcgcatcaaggatgtcttgtttgctagtattccaaaactactcttctgaagtttgaacttt 1553122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 193
Target Start/End: Original strand, 7226015 - 7226150
Alignment:
Q  58 gtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtct 157  Q
    ||||| || |||||| |||| || ||||||||||||||||  ||||| | |||||||||||||| | |||||  |  |||||| | | || || ||| ||    
T  7226015 gtcaccgagaagggattgaagcacgtggtagaaaactgcaagcaactgagagagatcaatttgaagaactgccgtggagtgcaaggtgatattgttgcct 7226114  T
Q  158 cgatggtattttcaaggccatcgttgaaaaagataa 193  Q
    | ||||| | |||||||||||| |||| ||||||||    
T  7226115 caatggtttcttcaaggccatcattgagaaagataa 7226150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 1600422 - 1600364
Alignment:
Q  134 aagtgcatgctaatgttattgtctcgatggtattttcaaggccatcgttgaaaaagata 192  Q
    ||||| ||||||| ||| |||||||||||||| ||| ||||||||| |||| |||||||    
T  1600422 aagtgaatgctaaggttgttgtctcgatggtacttttaaggccatccttgagaaagata 1600364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 566158 - 566110
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    |||| ||||| ||||||||||||||  |||| |||||||||||||||||    
T  566158 atgttacagagaagggagtgaaacacctggtggaaaactgcacacaact 566110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 1508146 - 1508198
Alignment:
Q  69 gggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttga 121  Q
    ||||||||| |||| | ||||||| ||||||||||| | ||||||||||||||    
T  1508146 gggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttga 1508198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 6603308 - 6603380
Alignment:
Q  32 aactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    |||||||||||||| | |||||| |||||||||| || |||||||||||||||||||||||||||| ||||||    
T  6603308 aactattattgaaatattgttattatgtcacagagaaaggagtgaaacatgtggtagaaaactgcaaacaact 6603380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 6402853 - 6402762
Alignment:
Q  32 aactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgagg 123  Q
    |||||||||||| | | |||||| |||||||||| ||||||| |||||||||| |||||||||| |||||||| | ||||||  ||||||||    
T  6402853 aactattattgagagattgttataatgtcacagaaaagggagcgaaacatgtgatagaaaactgtacacaactgagagagatttatttgagg 6402762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 14820674 - 14820598
Alignment:
Q  44 aaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttg 120  Q
    |||||||| || |||||||||| ||||| ||||||||||||||| ||||||||||||| || | |||||| ||||||    
T  14820674 aaaaatgtaatgatgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttg 14820598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 10579869 - 10579924
Alignment:
Q  58 gtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagat 113  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  10579869 gtcacaaagaagggagttaaacatgtggtagaaaactgcacacaacttagagagat 10579924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 6394833 - 6394769
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttg 120  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||||| | | |||||| ||||||    
T  6394833 atgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttg 6394769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 7119150 - 7119080
Alignment:
Q  32 aactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaa 102  Q
    |||||||| ||||| | |||||| |||||||| | || | |||||||||||||| ||||||||||||||||    
T  7119150 aactattactgaaagattgttattatgtcacaaaaaaagaagtgaaacatgtggaagaaaactgcacacaa 7119080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 7131628 - 7131558
Alignment:
Q  32 aactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaa 102  Q
    |||||||| ||||| | |||||| |||||||| | || | |||||||||||||| ||||||||||||||||    
T  7131628 aactattactgaaagattgttattatgtcacaaacaaagcagtgaaacatgtggaagaaaactgcacacaa 7131558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 19632434 - 19632360
Alignment:
Q  30 gcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    |||||| ||| ||||||| |||  | || ||||||| |||||||||||||| |||||||||||||||| ||||||    
T  19632434 gcaactcttactgaaaaattgtgctaatatcacagagaagggagtgaaacacgtggtagaaaactgcaaacaact 19632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 6589465 - 6589502
Alignment:
Q  68 agggagtgaaacatgtggtagaaaactgcacacaactt 105  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  6589465 agggagtgaaacatgtggtagaaaactgcacacgactt 6589502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 7994324 - 7994369
Alignment:
Q  68 agggagtgaaacatgtggtagaaaactgcacacaacttacagagat 113  Q
    ||||||||||||||||||||||||||||||| ||||| | ||||||    
T  7994324 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagat 7994369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 14818351 - 14818306
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacaca 101  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||||    
T  14818351 atgtcacagagaagggtgtgaaacatgtagtagaaaactgcacaca 14818306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 6415935 - 6415887
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    ||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  6415935 atgtcacagaagtgggagtgaaacatgtggtagagaactgcacacaact 6415887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 6585367 - 6585415
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    |||||||||| |||||| ||||||||||||||||||  |||||||||||    
T  6585367 atgtcacagagaagggactgaaacatgtggtagaaatttgcacacaact 6585415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 12102252 - 12102164
Alignment:
Q  79 catgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtctcgatggtatt 167  Q
    |||||||||||||||||||||||||| | ||||| |||| ||| | |||||| | |||||| |  ||||||| ||| ||||||| ||||    
T  12102252 catgtggtagaaaactgcacacaactgagagagagcaatctgaagaactgctataaagtgcttcataatgttgttgactcgatgatatt 12102164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 6432130 - 6432084
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaa 102  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||    
T  6432130 atgtcacacagaagggagtgaaacttgtggtagaaaaatgcacacaa 6432084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 6594724 - 6594782
Alignment:
Q  44 aaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaa 102  Q
    |||| ||| ||||| |||||||  ||||||  |||||||||||||||||||||||||||    
T  6594724 aaaattgtgatcatctcacagaggagggagccaaacatgtggtagaaaactgcacacaa 6594782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 9411324 - 9411186
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgt 155  Q
    |||||| ||||||||||||||  |||||||||| ||| |||   ||||| | ||||||||||||| |||  ||   || ||||||||||||| || |||     
T  9411324 atgtcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttgcggcgttgtcatcgagtgcatgctaatattgttga 9411225  T
Q  156 ctcgatggtattttcaaggccatcgttgaaaaagataaa 194  Q
    |   ||||||||||||||||| || ||||  ||||||||    
T  9411224 cgatatggtattttcaaggccgtcattgagcaagataaa 9411186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 28935004 - 28934954
Alignment:
Q  70 ggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttg 120  Q
    |||||||| |||||||||||||| ||||||||||| | ||||||| |||||    
T  28935004 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 28934954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 6426469 - 6426432
Alignment:
Q  67 aagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  6426469 aagggtgtgaaacaagtggtagaaaactgcacacaact 6426432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 491459 - 491395
Alignment:
Q  59 tcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgagg 123  Q
    |||||| |||||||||||  ||||  |||||||||||||| || || | ||||||||||||||||    
T  491459 tcacaggtaagggagtgatgcatgctgtagaaaactgcacgcagctgagagagatcaatttgagg 491395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 6597040 - 6597072
Alignment:
Q  74 tgaaacatgtggtagaaaactgcacacaactta 106  Q
    |||||||||||||||||||||||||| ||||||    
T  6597040 tgaaacatgtggtagaaaactgcacaaaactta 6597072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 34936267 - 34936430
Alignment:
Q  30 gcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgc 129  Q
    |||||||||| |  |||| |||| | ||||||| || ||||||||  | | |||||| ||||| ||||||||| | |  ||||||||||||||| |||||    
T  34936267 gcaactattacttcaaaattgttgtgatgtcacggagaagggagttgagcgtgtggttgaaaattgcacacaattgagggagatcaatttgaggaactgc 34936366  T
Q  130 tttcaagtgcatgctaatgttattgtctcgatggtattttcaaggccatcgttgaaaaagataa 193  Q
      | ||||| ||||||||||| ||  ||||||| ||  ||||||||||| ||||| ||||||||    
T  34936367 cataaagtggatgctaatgttgttacctcgatgataacttcaaggccattgttgagaaagataa 34936430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 18315518 - 18315572
Alignment:
Q  230 gggaactcttgtcgcgccaaggatgccttgtttgctagcattctgaaactgctct 284  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||| ||||| ||||    
T  18315518 gggaactcttctcgcgtcaaagatgccttgtttgctagcattctcaaactactct 18315572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 21235510 - 21235453
Alignment:
Q  73 gtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgaggcactgct 130  Q
    ||||| |||||||||||||||||||||||||| |  ||||||||||||| | ||||||    
T  21235510 gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgct 21235453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 44736511 - 44736444
Alignment:
Q  49 tgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaa 116  Q
    |||||| ||||||||   ||||||||||||||||| |||||||| || |||||||| | |||||||||    
T  44736511 tgttataatgtcacaacgaagggagtgaaacatgttgtagaaaattgtacacaactaagagagatcaa 44736444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 27922466 - 27922429
Alignment:
Q  67 aagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  27922466 aagggagtgaaccatgtggtagaaaactgcactcaact 27922429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 27922280 - 27922208
Alignment:
Q  247 caaggatgccttgtttgctagcattctgaaactgctctacttaagtttgaactttgaaatgtgagatgttttt 319  Q
    ||||||||||||||||||||||||| |  || |  ||| || |||||||| || |||||||| ||||||||||    
T  27922280 caaggatgccttgtttgctagcattgttgaagtcttctgctgaagtttgagctctgaaatgtaagatgttttt 27922208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 7554482 - 7554393
Alignment:
Q  31 caactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttg 120  Q
    ||||| ||| |||||  |||| || |||||||||| ||||||||||| |||||||||||||||||||| | ||| | |||||| ||||||    
T  7554482 caactgttactgaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 7554393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 29659026 - 29659092
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgag 122  Q
    |||||||||| || ||||| |||||||||||  |||||||||| ||||| || ||||||||||||||    
T  29659026 atgtcacagagaatggagtaaaacatgtggttcaaaactgcacgcaactgactgagatcaatttgag 29659092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 29719053 - 29719119
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttgag 122  Q
    |||||||||| || |||||||||||||||||  |||||||||  ||||| |  ||||||||||||||    
T  29719053 atgtcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttgag 29719119  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 15092274 - 15092345
Alignment:
Q  49 tgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttg 120  Q
    |||||| ||||||||||   |||||||||||||||| ||||||||||||||||| | | |||||| ||||||    
T  15092274 tgttataatgtcacagaagtgggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttg 15092345  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 10614562 - 10614521
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgca 97  Q
    ||||||||||  | ||||||||||||||||||||||||||||    
T  10614562 atgtcacagaagaaggagtgaaacatgtggtagaaaactgca 10614521  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 10170211 - 10170259
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    |||||||||| || |||||||||||||||  |||||||||| |||||||    
T  10170211 atgtcacagagaaaggagtgaaacatgtgaaagaaaactgctcacaact 10170259  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 10177736 - 10177784
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaact 104  Q
    |||||||||| || |||||||||||||||  |||||||||| |||||||    
T  10177736 atgtcacagagaaaggagtgaaacatgtgaaagaaaactgctcacaact 10177784  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 39165 - 39091
Alignment:
Q  44 aaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatt 118  Q
    ||||||||| || |||||||   ||||||||||||||||||||| | |||||||| ||||| | |||||| ||||    
T  39165 aaaaatgttctcgtgtcacaatgaagggagtgaaacatgtggtaaacaactgcacgcaactgagagagattaatt 39091  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 17205568 - 17205527
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgca 97  Q
    |||||||||| || ||| ||||||||||||||||||||||||    
T  17205568 atgtcacagaaaaaggattgaaacatgtggtagaaaactgca 17205527  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 32267433 - 32267381
Alignment:
Q  67 aagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaattt 119  Q
    ||||||||||| ||||| |||||||||||||| ||||||| | |||| |||||    
T  32267433 aagggagtgaagcatgtagtagaaaactgcacgcaacttagaaagattaattt 32267381  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 38267686 - 38267750
Alignment:
Q  56 atgtcacagataagggagtgaaacatgtggtagaaaactgcacacaacttacagagatcaatttg 120  Q
    ||||||| || ||||||||||  ||||||||  ||||||||||| |||| | |||||||||||||    
T  38267686 atgtcaccgagaagggagtgatgcatgtggtcaaaaactgcacaaaactcagagagatcaatttg 38267750  T

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Target: scaffold0295 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 771 - 803
Alignment:
Q  73 gtgaaacatgtggtagaaaactgcacacaactt 105  Q
    ||||||||||| |||||||||||||||||||||    
T  771 gtgaaacatgtagtagaaaactgcacacaactt 803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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