View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0424_low_9 (Length: 363)
Name: NF0424_low_9
Description: NF0424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0424_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 200 - 348
Target Start/End: Complemental strand, 1052350 - 1052201
Alignment:
| Q |
200 |
tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgt-tattaattgctcatttgataaaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
1052350 |
tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtcaattaattgctcattagataaaa |
1052251 |
T |
|
| Q |
299 |
ttaaatacatactagaattagaaactcttccaacatgccaaatctgacag |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1052250 |
ttaaatacatactagaattagaaactcttccaacatgccaaatctgacag |
1052201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 1052937 - 1052870
Alignment:
| Q |
31 |
cctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac |
98 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1052937 |
cctccaatttgtggtgtgagtagtttgtttgttgaagatattggtgcttgcccatttggttgacaaac |
1052870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 1046277 - 1046210
Alignment:
| Q |
31 |
cctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac |
98 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
1046277 |
cctccaattcgtggtgtgagtagtttgtctgtagaagatattggtgcttgtccatttggttgataaac |
1046210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 1032926 - 1032878
Alignment:
| Q |
300 |
taaatacatactagaattagaaactcttccaacatgccaaatctgacag |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1032926 |
taaatacatactagaattagaaactcttccaacatgccaaatctgacag |
1032878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 341
Target Start/End: Complemental strand, 1046130 - 1045975
Alignment:
| Q |
184 |
taattaaactagtgaatataaaataagtatcat-ctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtta-ttaa |
281 |
Q |
| |
|
|||||||||||||||| ||||| || |||||| || ||||||||||| ||||| |||||||| |||||| ||||||| | |||||| ||||| |||| |
|
|
| T |
1046130 |
taattaaactagtgaacataaatcaa-tatcattctgtaacaaaaattcaattcctacctaaaaa-aatact-gaaaaatca-aaaaatttgttagttaa |
1046035 |
T |
|
| Q |
282 |
ttgctcatttgataaaattaaatacatactagaattagaaactcttccaacatgccaaat |
341 |
Q |
| |
|
||||| ||||||| ||| ||||| ||||| |||||||||||| || |||||| ||||||| |
|
|
| T |
1046034 |
ttgctaatttgattaaactaaatgcataccagaattagaaaccctaccaacaagccaaat |
1045975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 1071071 - 1071009
Alignment:
| Q |
36 |
aatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac |
98 |
Q |
| |
|
|||||||||| | ||| | |||||||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
1071071 |
aatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccatttggctgataaac |
1071009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 1043321 - 1043286
Alignment:
| Q |
313 |
gaattagaaactcttccaacatgccaaatctgacag |
348 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1043321 |
gaatttgaaactcttccaacatgccaaatctgacag |
1043286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 1065080 - 1065046
Alignment:
| Q |
313 |
gaattagaaactcttccaacatgccaaatctgaca |
347 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
1065080 |
gaatcagaaactcttccaacatgccaaatctgaca |
1065046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1596 times since January 2019
Visitors: 3232