View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0425_high_8 (Length: 204)
Name: NF0425_high_8
Description: NF0425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0425_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 8913518 - 8913635
Alignment:
| Q |
1 |
gtacttgaacgtgacactctttgcttatcttagttataactattttatgagttagtggggacatttatctgcatgttgtattcaatttgagaaagattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8913518 |
gtacttgaacgtgacactctttgcttatcttagttataactattttatgagttagtggggacatttatctgcatgttgtattcaatttgagaaagattta |
8913617 |
T |
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| Q |
101 |
aagcattaggctagctct |
118 |
Q |
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|||||||||||||||||| |
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| T |
8913618 |
aagcattaggctagctct |
8913635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8346504 - 8346615
Alignment:
| Q |
1 |
gtacttgaacgtgacactctttgcttatcttagttataactattttatgagttagtggggacatttatctgcatgttgtattcaatttgagaaagattta |
100 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8346504 |
gtacttgaacgtgacactctttgcttatcttggttacaactattttatgagttattggggagatttatctgcatgttgtattcaatttgagaaagattta |
8346603 |
T |
|
| Q |
101 |
aagcattaggct |
112 |
Q |
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|||||||||||| |
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| T |
8346604 |
aagcattaggct |
8346615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 42823117 - 42823006
Alignment:
| Q |
1 |
gtacttgaacgtgacactctttgcttatcttagttataactattttatgagttagtggggacatttatctgcatgttgtattcaatttgagaaagattta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42823117 |
gtacttgaacgtgacactctttgcttatcttggttacaactattttatgagttattggggagatttatctgcatgttgtattcaatttgagaaagattta |
42823018 |
T |
|
| Q |
101 |
aagcattaggct |
112 |
Q |
| |
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|||||||||||| |
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| T |
42823017 |
aagcattaggct |
42823006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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