View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0425_low_10 (Length: 273)
Name: NF0425_low_10
Description: NF0425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0425_low_10 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 32732 - 32916
Alignment:
| Q |
56 |
acatcatcataaatcttatcactaataatcctaaactacttaaacacatgtgatggccccctgtaatattgctaccaatcaacaagaaaactaaaactaa |
155 |
Q |
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| T |
32732 |
acatcatactaaatcttatcactgataatcctaaactacttaaacacatgtgaaggccccctgtaatattgctaccaatcaacaagaaaactaaaactaa |
32831 |
T |
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| Q |
156 |
ataaaattatctggtcatt-aaactcacagtttatagtgctgcctgtgtagactagatgctgagtttttatggtggctatctctg |
239 |
Q |
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| T |
32832 |
ataaaattatctggtcattaaaactcacagtttatagtgctgcctgtgtagactagatgctgagtttttatggtggctatctctg |
32916 |
T |
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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 48880925 - 48880737
Alignment:
| Q |
66 |
aaatcttatcactaataatcctaaactacttaaacacatgtgatggccccctgtaatattgctaccaatcaacaagaaaactaaaactaaataaaattat |
165 |
Q |
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|||| ||||||||||||||||||||||||||| ||| ||||| |||||| | ||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
48880925 |
aaatgttatcactaataatcctaaactacttataca--tgtgaaggccccttataatattgctatcaaccaacaagaaaactaaaactaaataaaattac |
48880828 |
T |
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| Q |
166 |
ctggtcatt-aaactcacag----------------tttatagtgctgcctgtgtagactagatgctgagtttttatggtggctatctctg |
239 |
Q |
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| T |
48880827 |
ctggtcattaaaactcacggttcatacattcaattctttatagtgttgcctgtgtagactagatgccgagtttttatggtggctatctctg |
48880737 |
T |
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