View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0425_low_2 (Length: 456)
Name: NF0425_low_2
Description: NF0425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0425_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 6354175 - 6353827
Alignment:
| Q |
13 |
gtcttggcctcttatacacctcagaaagaaagnnnnnnncagacacttgcactgcactttgcgcctcgcacagcccatgcggccaacgcagtttgtactc |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6354175 |
gtcttggcctcttatacacctcagaaagaaagaaaaaaacagacacttgcactgcactttgcgcctcgcacagcccatgcggccaacgcagtttgtactc |
6354076 |
T |
|
| Q |
113 |
tactgacctctacacagctaccagaagcaggaccttcctgaaacgcgttattgttgcacctaggacaacagtccctgtgtccagcacatacaacagtagc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6354075 |
tactgacctctacacagctaccagaagcaggaccttcctgaaacgtgttattgttgcacctaggacaacagtccctgtgtccagcacatacaacagtagc |
6353976 |
T |
|
| Q |
213 |
cgaaaagagttatttttcttcatatatatccaacatgagatttcaaggcatgtttcaactagacaacaccagaatgctacttgcatgactctccattgat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353975 |
cgaaaagagttatttttcttcatatatatccaacatgagatttcaaggcatgtttcaactagacaacaccagaatgctacttgcatgactctccattgat |
6353876 |
T |
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| Q |
313 |
gattatactcacgaaaaatagatcccttgaaatgatatatttccctcgt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353875 |
gattatactcacgaaaaatagatcccttgaaatgatatatttccctcgt |
6353827 |
T |
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