View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0425_low_3 (Length: 418)
Name: NF0425_low_3
Description: NF0425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0425_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 29 - 408
Target Start/End: Original strand, 34819908 - 34820287
Alignment:
| Q |
29 |
aaaaacaaggagccatggtagcaaatggcttcccctgttttcttggtcttggaaaagaaagcacactctgtaatagaacaagaagcctaaagccatggaa |
128 |
Q |
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| T |
34819908 |
aaaaacaaggagccatggtagcaaatggcttaccctgttttcttggtcttggaaaagaaagcacactctgtaatagaacaagaagcctaaagccatggaa |
34820007 |
T |
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| Q |
129 |
tgaaggagcatgtgtaacctattgatgataagcaacaacttttggacatggcaggtattgagaggaagagttccttgacttgcctccatttctccctaga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820008 |
tgaaggagcatgtgtaacctattgatgataagcaacaacttttggacatggcaggtattgagaggaagagttccttgacttgcctccatttctccctaga |
34820107 |
T |
|
| Q |
229 |
tgataaaccttgcagttacttgatgtttctaaaatgacttaatcacttaactatattatactactactgtagccgacttcttgtttcaaaaaatagggtg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820108 |
tgataaaccttgcagttacttgatgtttctaaaatgacttaatcacttaactatattatactactactgtagccgacttcttgtttcaaaaaatagggtg |
34820207 |
T |
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| Q |
329 |
aagcaagaatttaactttgaaacgtctattctgaccatgggacaaaaaggacataaagaaaacaaggatgctagcctatg |
408 |
Q |
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| T |
34820208 |
aagcaagaatttaactttgaaacgtctattctgaccatgggacaaaaaggacataaagaaaacaaggatgctagcctatg |
34820287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 28940518 - 28940612
Alignment:
| Q |
314 |
tcaaaaaatagggtgaagcaagaatttaactttgaaacgtctattctgaccatgggacaaaaaggacataaagaaaacaaggatgctagcctatg |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28940518 |
tcaaaaaatagggtgaagcaagaatttaactttgaaacgtctattctgaccatgggacaaaaaggacataaagaaaacaaggatgctagcctatg |
28940612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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