View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0425_low_5 (Length: 405)
Name: NF0425_low_5
Description: NF0425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0425_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 30 - 394
Target Start/End: Complemental strand, 52580527 - 52580163
Alignment:
| Q |
30 |
gaaacttcgaggtgatgtagaaatgtgcggttacagagatgtggagttgatgtggaacatgttaggcttaaacctcaagcctgaggcagtggaaactcca |
129 |
Q |
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| T |
52580527 |
gaaacttcgaggtgatgtagaaatgtgcggttacagagatgtggagttgatgtggaacatgttaggcttaaacctcaagcctgaggcagtggaaactcca |
52580428 |
T |
|
| Q |
130 |
cgaagcactaagccaaaacttacaaggcgtagctgcaagcaaagattcaattctaagcttttcttttggactaaccaataataaacttgtgcctcaaata |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580427 |
cgaagcactaagccaaaacttacaaggcgtagctgcaagcaaagattcaattctaagcttttcttttggactaaccaataataaacttgtgcctcaaata |
52580328 |
T |
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| Q |
230 |
gtaaattttgaaagttttgtagtgggcacaatgtttattttgtacatgatgatataatcataatgaattttataaacttatgtaaatacaatttatacaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580327 |
gtaaattttgaaagttttgtagtgggcacaatgtttattttgtacatgatgatataatcataatgaattttataaacttatgtaaatacaatttatacaa |
52580228 |
T |
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| Q |
330 |
gtaactgttaatttgtctctctatacattatacagataatcgaaagaaacgtcttcttgtttcat |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580227 |
gtaactgttaatttgtctctctatacattatacagataatcgaaagaaacgtcttcttgtttcat |
52580163 |
T |
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