View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0425_low_6 (Length: 351)
Name: NF0425_low_6
Description: NF0425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0425_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 8913518 - 8913863
Alignment:
| Q |
1 |
gtacttgaacgtgacactctttgcttatcttagttataactattttatgagttagtggggacatttatctgcatgttgtattcaatttgagaaagattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8913518 |
gtacttgaacgtgacactctttgcttatcttagttataactattttatgagttagtggggacatttatctgcatgttgtattcaatttgagaaagattta |
8913617 |
T |
|
| Q |
101 |
aagcattaggctagctctttgatccaatccaattatgtggtcacacaataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8913618 |
aagcattaggctagctctttgatccaatccaattatgtggtcacacaataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatc |
8913717 |
T |
|
| Q |
201 |
ttctggttatagttggaatctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttc |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8913718 |
ttctggttatagttggaatctcaatctgaacctttcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttc |
8913817 |
T |
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| Q |
301 |
ctaaacttttgggaaataaagtaaagagcatttggttcttttctct |
346 |
Q |
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| T |
8913818 |
ctaaacttttgggaaataaactaaagagcatttggttcttttctct |
8913863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 8346504 - 8346846
Alignment:
| Q |
1 |
gtacttgaacgtgacactctttgcttatcttagttataactattttatgagttagtggggacatttatctgcatgttgtattcaatttgagaaagattta |
100 |
Q |
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|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8346504 |
gtacttgaacgtgacactctttgcttatcttggttacaactattttatgagttattggggagatttatctgcatgttgtattcaatttgagaaagattta |
8346603 |
T |
|
| Q |
101 |
aagcattaggctagctctttgatccaatccaattatgtggtcacac-aataacatgaatgtctctttctcaatacttatttatgccggttaatttgccat |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||| |||||||||||||||||||||||| |
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| T |
8346604 |
aagcattaggct----ctttgatccaatccaattatgtggtcacaataataacatgaaggtctctatcaaaatacgtatttatgccggttaatttgccat |
8346699 |
T |
|
| Q |
200 |
cttctggttatagttggaatctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagtt |
299 |
Q |
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||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8346700 |
cttatggttatagttggaatctcaatctgaacctttaccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagtt |
8346799 |
T |
|
| Q |
300 |
cctaaacttttgggaaataaagtaaagagcatttggttcttttctct |
346 |
Q |
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||||||| ||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
8346800 |
cctaaacgtttgggaaatacactaaagagcatttggttcttttctct |
8346846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 42823117 - 42822775
Alignment:
| Q |
1 |
gtacttgaacgtgacactctttgcttatcttagttataactattttatgagttagtggggacatttatctgcatgttgtattcaatttgagaaagattta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42823117 |
gtacttgaacgtgacactctttgcttatcttggttacaactattttatgagttattggggagatttatctgcatgttgtattcaatttgagaaagattta |
42823018 |
T |
|
| Q |
101 |
aagcattaggctagctctttgatccaatccaattatgtggtcacac-aataacatgaatgtctctttctcaatacttatttatgccggttaatttgccat |
199 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||| |||||||||||||||||||||||| |
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| T |
42823017 |
aagcattaggct----ctttgatccaatccaattatgtggtcacaataataacatgaaggtctctatcaaaatacgtatttatgccggttaatttgccat |
42822922 |
T |
|
| Q |
200 |
cttctggttatagttggaatctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagtt |
299 |
Q |
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||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42822921 |
cttatggttatagttggaatctcaatctgaacctttaccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagtt |
42822822 |
T |
|
| Q |
300 |
cctaaacttttgggaaataaagtaaagagcatttggttcttttctct |
346 |
Q |
| |
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||||||| ||||||||||| | ||||||||||||||||||||||||| |
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| T |
42822821 |
cctaaacgtttgggaaatacactaaagagcatttggttcttttctct |
42822775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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