View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0425_low_9 (Length: 292)
Name: NF0425_low_9
Description: NF0425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0425_low_9 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 95 - 292
Target Start/End: Original strand, 14370816 - 14371013
Alignment:
| Q |
95 |
agagcttggtgtgttttctatctttttgtttcatgttattgttttgtggttgacattgtcgttctttatcaaaatcacattgagttaacggttcactgca |
194 |
Q |
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| T |
14370816 |
agagcttggtgtgttttctatctttttgtttcatgttattgttttgtggttgacattgttgttctttatcaaaatcacattgagttaacggttcactgca |
14370915 |
T |
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| Q |
195 |
tgatttctgatgttgtatcattttgtgttggtttgttcttttgttatgtggggtattgtgtgaaacttgagagtgaagaaagtgatagaactattcat |
292 |
Q |
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| T |
14370916 |
tgatttctgatgttgtatcattttgtgttggtttgttcttttgttatgtggggtattgtgtgaaacttgagagtgaagaaagtgatagaactattcat |
14371013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 95 - 291
Target Start/End: Complemental strand, 14242505 - 14242309
Alignment:
| Q |
95 |
agagcttggtgtgttttctatctttttgtttcatgttattgttttgtggttgacattgtcgttctttatcaaaatcacattgagttaacggttcactgca |
194 |
Q |
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| T |
14242505 |
agagcttggtgtgttttctatctttttgtttcatgttattgttttgtggttgacattgttgttctttatgaaaatcacattgagttaacggttcaatgca |
14242406 |
T |
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| Q |
195 |
tgatttctgatgttgtatcattttgtgttggtttgttcttttgttatgtggggtattgtgtgaaacttgagagtgaagaaagtgatagaactattca |
291 |
Q |
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| T |
14242405 |
tggtttctgatgtggtatcattttgtgttggtttgttcttttgttatgtggggtattgtgtgaaaaacgagagtgaagaaagtgatgaaactattca |
14242309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 95 - 291
Target Start/End: Complemental strand, 41453526 - 41453330
Alignment:
| Q |
95 |
agagcttggtgtgttttctatctttttgtttcatgttattgttttgtggttgacattgtcgttctttatcaaaatcacattgagttaacggttcactgca |
194 |
Q |
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| T |
41453526 |
agagcttggtgtgttttctttttatttgtttcatgttattgttttgtggttgatattgttgttctttatgaaaatcacatcgagttaacagttcaatgct |
41453427 |
T |
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| Q |
195 |
tgatttctgatgttgtatcattttgtgttggtttgttcttttgttatgtggggtattgtgtgaaacttgagagtgaagaaagtgatagaactattca |
291 |
Q |
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| T |
41453426 |
tggtttctgatgtggggtcattttgtgttggtttgtttttttgttatgtggggtattgtgtgaaaaatgagagtgaagaaagtgatagcacttttca |
41453330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 95 - 291
Target Start/End: Complemental strand, 41440363 - 41440167
Alignment:
| Q |
95 |
agagcttggtgtgttttctatctttttgtttcatgttattgttttgtggttgacattgtcgttctttatcaaaatcacattgagttaacggttcactgca |
194 |
Q |
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| T |
41440363 |
agagcttggtgtgttttatttttatttgtttcatgttattgctctgtggttgatattgttgttctatatgaaaatcacattgagttaacagttcaatgct |
41440264 |
T |
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| Q |
195 |
tgatttctgatgttgtatcattttgtgttggtttgttcttttgttatgtggggtattgtgtgaaacttgagagtgaagaaagtgatagaactattca |
291 |
Q |
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| T |
41440263 |
tggtttctgatgtggtgtccttttgtgttggtttcttcttttgttatgtggggtattgtgtgaaaaatgagagtgaagaaagtgaaagaactcttca |
41440167 |
T |
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