View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0426_high_5 (Length: 251)
Name: NF0426_high_5
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0426_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 8092407 - 8092181
Alignment:
| Q |
24 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaacca |
123 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
8092407 |
tcatcaacacattaaaggtatcacacatagctaaataaactaatgtttggacaacattatattttgagggtacataaatcaagagtggtttagcaaacca |
8092308 |
T |
|
| Q |
124 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagaagagaagatcaacagtcttttttatctatccaattaaggat |
223 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8092307 |
atatctaaaacttatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagaagagaagatcaacagtc-ttttcatctatccaattaaggat |
8092209 |
T |
|
| Q |
224 |
catttctttgacttttgcaagcacatat |
251 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8092208 |
catttctttgacttttgcaagcacatat |
8092181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 2334920 - 2334694
Alignment:
| Q |
24 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaacca |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
2334920 |
tcatcaacacattaaaggtagcacacctagctaaataagctaatgcttggacaacattacattttgagagtacataaatcaagagtggttcagcaaacca |
2334821 |
T |
|
| Q |
124 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagaagagaagatcaacagtcttttttatctatccaattaaggat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||| |||||||||||| |||||||||| |
|
|
| T |
2334820 |
atatctaaaacctatcacccaaaccaatttcttcctcaagtgatcattgacaaaggagaagagaagatccacggtc-tttttatctatctaattaaggat |
2334722 |
T |
|
| Q |
224 |
catttctttgacttttgcaagcacatat |
251 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
2334721 |
catttctttgacttttacaagcacatat |
2334694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 27580946 - 27580766
Alignment:
| Q |
24 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaacca |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
27580946 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgcttggacaacattacattttgagagtacttaaatcaagagtggtttagcaaacta |
27580847 |
T |
|
| Q |
124 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagaagagaagatcaacagtcttttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
27580846 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtgaatattgacaaagtagaacagaagattcacagtcttttt |
27580766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 27580493 - 27580451
Alignment:
| Q |
209 |
tatccaattaaggatcatttctttgacttttgcaagcacatat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27580493 |
tatccaattaaggatcatttctttgacttttgcaagcacatat |
27580451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 17037737 - 17037610
Alignment:
| Q |
123 |
aatatctaaaacctatcacccaaaccaatttcttccgcaagtggtcattgacaaaggagaagagaagatcaacagtcttttttatctatccaattaagga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
17037737 |
aatatctaaaacctatcacccaaaccaatttcttcctcaagtgatcattgacaaaggagaagagaagatccacggtc-tttttatctatccaattaagga |
17037639 |
T |
|
| Q |
223 |
tcatttctttgacttttgcaagcacatat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17037638 |
tcatttctttgacttttgcaagcacatat |
17037610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 49186711 - 49186570
Alignment:
| Q |
24 |
tcatcaacacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaacca |
123 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
49186711 |
tcatcaatacattaaaggttgcacacctagcgaaataagctaatgtttggacaacatcacattttgagagtacataaatcaagagtggttcagcaaacca |
49186612 |
T |
|
| Q |
124 |
atatctaaaacctatcacccaaaccaatttcttccgcaagtg |
165 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| |||||| |
|
|
| T |
49186611 |
atatctaaaatctatcacccaaatcaatttcttcctcaagtg |
49186570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 38987215 - 38987333
Alignment:
| Q |
30 |
acacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaaccaatatct |
129 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| | |||| ||||||||||||| |
|
|
| T |
38987215 |
acacattaaagatagcgcacatagctaaataagctaaagtttggataatattacattttgagagtacataaatca-----ggtttaccaaaccaatatct |
38987309 |
T |
|
| Q |
130 |
aaaacctatcacccaaaccaattt |
153 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
38987310 |
taaatctatcacccaaaccaattt |
38987333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 39018312 - 39018430
Alignment:
| Q |
30 |
acacattaaaggtagcacacatagctaaataagctaatgtttggacaacattacattttgagagtacataaatcaagagtgttttagcaaaccaatatct |
129 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| | |||| ||||||||||||| |
|
|
| T |
39018312 |
acacattaaagatagcgcacatagctaaataagctaaagtttggataatattacattttgagagtacataaatca-----ggtttaccaaaccaatatct |
39018406 |
T |
|
| Q |
130 |
aaaacctatcacccaaaccaattt |
153 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
39018407 |
taaatctatcacccaaaccaattt |
39018430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1674 times since January 2019
Visitors: 3233