View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0426_low_11 (Length: 282)
Name: NF0426_low_11
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0426_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 34910479 - 34910697
Alignment:
| Q |
20 |
cacagacacacacacattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtt |
119 |
Q |
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| T |
34910479 |
cacacacacacacacattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtacattcagagtaagcaaagctagaccagttggtt |
34910578 |
T |
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| Q |
120 |
tgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactttaaaatattgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34910579 |
tgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcactacaaataatctatgtgtatgaaaactcgtatttcactttaaaatattgt |
34910678 |
T |
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| Q |
220 |
gcttctcacacatcacatg |
238 |
Q |
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| T |
34910679 |
gcttctcacacatcacatg |
34910697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 28543086 - 28542936
Alignment:
| Q |
20 |
cacagacacacacacattaattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagctagaccagttggtt |
119 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| || || ||| |
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| T |
28543086 |
cacatacacacacccattaattcacatgaaaacttcattaaagaagaaataaaatacaataatagtaaattcaaagtaaccaaagctaga-caatttgtt |
28542988 |
T |
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| Q |
120 |
tgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcacta |
171 |
Q |
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| T |
28542987 |
tgcaaatccttcataaaaacaaaatcttcctaaaagcattagctaagtacta |
28542936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 34905307 - 34905373
Alignment:
| Q |
40 |
ttcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct |
106 |
Q |
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| T |
34905307 |
ttcacatgaaatcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagct |
34905373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 34905400 - 34905491
Alignment:
| Q |
150 |
taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactt---taaaatattgtgcttctcacacatcacatg |
238 |
Q |
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| T |
34905400 |
taaaagaattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcacttctttaaaatattgtgcttctcacacatcacatg |
34905491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 34896848 - 34896937
Alignment:
| Q |
150 |
taaaagcattagctaagcactacaaagaatctatgtgtatgaaaactcgtatttcactt-taaaatattgtgcttctcacacatcacatg |
238 |
Q |
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|||||||||| ||||||||||||||| ||| ||||||||||||||| |||||| ||| | ||||||||||||||||||||||||||| |
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| T |
34896848 |
taaaagcattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcgcttctttaatattgtgcttctcacacatcacatg |
34896937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 34896753 - 34896821
Alignment:
| Q |
38 |
aattcacatgaaatcttcattaaagaagaaagaaaatacaataatagtaaattcagagtaagcaaagct |
106 |
Q |
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|||||||||||||||||||||| | ||||||||||||| |||||| |||||||||| | ||||||||| |
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| T |
34896753 |
aattcacatgaaatcttcattagaaaagaaagaaaatatgataataataaattcagatttagcaaagct |
34896821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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