View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0426_low_13 (Length: 269)
Name: NF0426_low_13
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0426_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 269
Target Start/End: Complemental strand, 1945964 - 1945730
Alignment:
| Q |
32 |
tttagtgtaattttgtatgttttaggagattgaaatgaaagagtaattattataagagagatggacacaaggcgtgaacaacactgattcccaatccccc |
131 |
Q |
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| T |
1945964 |
tttagtgtaattttgtatgttttaggagattgaaatgaaagagtaattattataagagagatggacccaaggcgtgaacaacaccgattcccaatccccc |
1945865 |
T |
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| Q |
132 |
taatgaataattttagatagtttttcgtttac----tacaaattaattaatacttattatacctctaattactactacatagtacatatggattcttcgg |
227 |
Q |
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| T |
1945864 |
taatgaataattttagatagtttttcgtttactatatacaaattaattaatacttattatacctctaattactac-------tacatatggattcttcgg |
1945772 |
T |
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| Q |
228 |
ttgcaaatctttgaaggagaggatcttttgaatgaaaggaca |
269 |
Q |
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| T |
1945771 |
ttgcaaatctttgaaggaaaggatcttttgaatgaaaggaca |
1945730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 269
Target Start/End: Complemental strand, 2057444 - 2057317
Alignment:
| Q |
134 |
atgaataattttagatagtttttcg-tttactacaaattaattaatacttattatacctctaattactactacatagtacatatggattcttcggttgca |
232 |
Q |
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|||||| |||||||||||||||||| |||||||||||||| | |||||||| | |||||||| || ||||| ||||| ||| ||| |||||| |
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| T |
2057444 |
atgaattattttagatagtttttcgctttactacaaattagt----acttattacatctctaattgctgctaca-----catataaattgttctgttgca |
2057354 |
T |
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| Q |
233 |
aatctttgaaggagaggatcttttgaatgaaaggaca |
269 |
Q |
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| T |
2057353 |
gatcattgaaggaaaggatcttttaaatgaaaggaca |
2057317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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