View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0426_low_15 (Length: 265)
Name: NF0426_low_15
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0426_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 42004238 - 42004473
Alignment:
| Q |
1 |
gtcaagctgtacattgccagtgtggtcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgccgaaagactaggc |
100 |
Q |
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| T |
42004238 |
gtcaagctgtacattgccagtgtggtcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgccgaaagactaggc |
42004337 |
T |
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| Q |
101 |
tggttcttttgttcgtcattttccctgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagttgctatgaatcca |
200 |
Q |
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| T |
42004338 |
tggttcttttgttcgtcattttccctgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagttgctgtgaatcca |
42004437 |
T |
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| Q |
201 |
atagattcagcggcaggtcaatgttatccatctctt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42004438 |
atagattcagcggcaggtcaatgttatccatctctt |
42004473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 42013102 - 42013304
Alignment:
| Q |
26 |
tcaagattttggcactcttccttgtctttcttcaactgctctggtcctagatgagcatatgccgaaagactaggctggttcttttgttcgtcattttccc |
125 |
Q |
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| T |
42013102 |
tcaagattttgacactcttcaatatctttcttcaattgctctgctcctaaatgagcatatacggaaagactaggtcgttccatttgctctccgctttccc |
42013201 |
T |
|
| Q |
126 |
tgtgtcttttcggagactggctttgaatgaaatcttcgaaccaagaaaatgtttcgggaagttgctatgaatccaatagattcagcggcaggtcaatgtt |
225 |
Q |
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| T |
42013202 |
catcccttttcggagactggctctgaaagaaatctgcgaacaaggaaagtccttccgcaagttgctgtgaatccaataaattctgcgacaggtcaaagtt |
42013301 |
T |
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| Q |
226 |
atc |
228 |
Q |
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||| |
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| T |
42013302 |
atc |
42013304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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