View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0426_low_21 (Length: 244)
Name: NF0426_low_21
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0426_low_21 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
| Q |
57 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
154 |
Q |
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| T |
42010418 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
42010321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
| Q |
57 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
154 |
Q |
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| T |
1245756 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
1245659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 3762512 - 3762597
Alignment:
| Q |
159 |
cactgtcaccaacaacaggcatctccctaaccttattacgagctggattcctccccaagaacgtaatagtacttccattatacttt |
244 |
Q |
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| T |
3762512 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatacttt |
3762597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 3776599 - 3776678
Alignment:
| Q |
165 |
caccaacaacaggcatctccctaaccttattacgagctggattcctccccaagaacgtaatagtacttccattatacttt |
244 |
Q |
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| T |
3776599 |
caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatacttt |
3776678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 3745722 - 3745801
Alignment:
| Q |
165 |
caccaacaacaggcatctccctaaccttattacgagctggattcctccccaagaacgtaatagtacttccattatacttt |
244 |
Q |
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| T |
3745722 |
caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatacttt |
3745801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 3780912 - 3780991
Alignment:
| Q |
165 |
caccaacaacaggcatctccctaaccttattacgagctggattcctccccaagaacgtaatagtacttccattatacttt |
244 |
Q |
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|||||||||||||||||||||||||| |||| || ||||||||||| | || |||| |||||| |||||||||||| |
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| T |
3780912 |
caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatacttt |
3780991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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