View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0426_low_25 (Length: 215)

Name: NF0426_low_25
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0426_low_25
NF0426_low_25
[»] chr8 (3 HSPs)
chr8 (138-193)||(12930985-12931040)
chr8 (138-194)||(12935731-12935787)
chr8 (140-185)||(26504850-26504895)
[»] chr7 (5 HSPs)
chr7 (140-195)||(37040424-37040479)
chr7 (138-193)||(12099306-12099361)
chr7 (140-193)||(15290541-15290594)
chr7 (142-193)||(12084700-12084751)
chr7 (138-170)||(2757236-2757268)
[»] chr4 (7 HSPs)
chr4 (138-193)||(11104774-11104829)
chr4 (138-193)||(14174247-14174302)
chr4 (138-193)||(14179001-14179056)
chr4 (138-193)||(28606806-28606861)
chr4 (138-193)||(28611568-28611623)
chr4 (138-193)||(44161894-44161949)
chr4 (137-193)||(48826702-48826758)
[»] chr1 (1 HSPs)
chr1 (138-193)||(34907448-34907503)
[»] chr2 (1 HSPs)
chr2 (138-193)||(8539493-8539548)
[»] chr6 (1 HSPs)
chr6 (146-193)||(2100199-2100246)
[»] chr5 (3 HSPs)
chr5 (138-193)||(42910993-42911048)
chr5 (140-193)||(29106878-29106931)
chr5 (141-193)||(38994699-38994751)
[»] chr3 (1 HSPs)
chr3 (140-193)||(51302966-51303019)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 12930985 - 12931040
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930985 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 12931040  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 12935731 - 12935787
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacag 194  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935731 tcttttgaattttggaattttaatttacacttgcgttaagctcgtcgagcccaacag 12935787  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
Q  140 ttttggattttggaattttaatttacacttgcgttaagctcgtcga 185  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||||    
T  26504895 ttttggattttgaaattttaatttacacttccattaaactcgtcga 26504850  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 37040479 - 37040424
Alignment:
Q  140 ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaga 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37040479 ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaga 37040424  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 12099306 - 12099361
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  12099306 tcttttggattttggaattttaatttacactcgcgttaaactcgtcgagcccaaca 12099361  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 15290541 - 15290594
Alignment:
Q  140 ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  15290541 ttttggattttgaaattttaatttacaattgcgttaagctcgtcgagcccaaca 15290594  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 12084700 - 12084751
Alignment:
Q  142 ttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    |||||||||| ||||||||||||| || | ||||||||||| ||||||||||    
T  12084700 ttggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca 12084751  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 2757268 - 2757236
Alignment:
Q  138 tcttttggattttggaattttaatttacacttg 170  Q
    ||||||| |||||||||||||||||||||||||    
T  2757268 tcttttgaattttggaattttaatttacacttg 2757236  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 11104774 - 11104829
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104774 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 11104829  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 14174247 - 14174302
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174247 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 14174302  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 14179001 - 14179056
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14179001 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 14179056  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 28606861 - 28606806
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606861 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 28606806  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 28611623 - 28611568
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611623 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 28611568  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 44161894 - 44161949
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44161894 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 44161949  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 48826758 - 48826702
Alignment:
Q  137 atcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    |||| ||| |||||| |||||||||||||| |||||||||||||||||| |||||||    
T  48826758 atctcttgaattttgaaattttaatttacaattgcgttaagctcgtcgatcccaaca 48826702  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 34907448 - 34907503
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907448 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 34907503  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 8539493 - 8539548
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  8539493 tcttttagaatttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 8539548  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 2100246 - 2100199
Alignment:
Q  146 attttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2100246 attttggaattttaatttacacttgtgttaagctcgtcgagcccaaca 2100199  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 42911048 - 42910993
Alignment:
Q  138 tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  42911048 tcttttggattttaaaattttaatttccacttgcgttaagctcgtcgagcccaaca 42910993  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 29106931 - 29106878
Alignment:
Q  140 ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| |||||||    
T  29106931 ttttggattttggaattttaatttacacttgcattaagctcctcgatcccaaca 29106878  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 38994751 - 38994699
Alignment:
Q  141 tttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    ||||| |||||||||||||||||||||| || ||||| ||||| |||||||||    
T  38994751 tttgggttttggaattttaatttacactagcattaagatcgtcaagcccaaca 38994699  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 51302966 - 51303019
Alignment:
Q  140 ttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca 193  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  51302966 ttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaaca 51303019  T

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