View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0426_low_5 (Length: 397)
Name: NF0426_low_5
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0426_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 58 - 388
Target Start/End: Complemental strand, 3089097 - 3088767
Alignment:
| Q |
58 |
aagaaatctaaacattatttaacatttggaggcaaaaagagattgctgaaattgaaagtggaagagaaaaggtgctcacttatttacacaactagagata |
157 |
Q |
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| T |
3089097 |
aagaaatctaaacattaattaacatttggaggcaaaaagagattgctgaaattgaaagtggaagagaaaaggtgctcacttatttacacaactagagata |
3088998 |
T |
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| Q |
158 |
tccttgcaatgttcccaagaagcaacatcatctgaccagattccctgcatacaagaaataataagttgattttatttggagccaataaaaaatccatgtg |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088997 |
tccttgcaatgttcccaagaagcaacatcatctgaccagattccctgcatacaagaaataataagttgattttatttggagccaataaaaaatccatgtg |
3088898 |
T |
|
| Q |
258 |
ttcattcaatctaggaagagtgacagaaaaatttaaataatgttacttacattggtatagtttttctcaatgtcttggaggaggagtgtcacatctttgt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088897 |
ttcattcaatctaggaagagtgacagaaaaatttaaataatgttacttacattggtatagtttttctcaatgtcttggaggaggagtgtcacatctttgt |
3088798 |
T |
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| Q |
358 |
catagtaatctgctaatgctgtgagaataat |
388 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3088797 |
catagtaatctgctaatgctgtgagaataat |
3088767 |
T |
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