View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0426_low_6 (Length: 363)

Name: NF0426_low_6
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0426_low_6
NF0426_low_6
[»] chr2 (43 HSPs)
chr2 (178-317)||(4578782-4578921)
chr2 (178-317)||(4578912-4579051)
chr2 (178-318)||(18297398-18297539)
chr2 (186-325)||(25193664-25193803)
chr2 (186-325)||(2264327-2264466)
chr2 (186-318)||(2264203-2264335)
chr2 (178-286)||(14550645-14550754)
chr2 (186-282)||(25193576-25193672)
chr2 (178-286)||(4579042-4579148)
chr2 (240-320)||(2264463-2264543)
chr2 (296-363)||(4578942-4579009)
chr2 (296-363)||(18297429-18297496)
chr2 (296-363)||(25193583-25193650)
chr2 (296-363)||(25193714-25193781)
chr2 (239-317)||(4578713-4578791)
chr2 (296-363)||(4579070-4579137)
chr2 (296-363)||(14550676-14550743)
chr2 (240-325)||(25193795-25193880)
chr2 (296-363)||(2264377-2264444)
chr2 (296-363)||(4578812-4578879)
chr2 (296-351)||(2264258-2264313)
chr2 (265-320)||(14550602-14550657)
chr2 (277-324)||(18297367-18297414)
chr2 (240-286)||(4280870-4280916)
chr2 (327-363)||(4578713-4578749)
chr2 (240-284)||(25995901-25995945)
chr2 (328-363)||(2264508-2264543)
chr2 (328-363)||(4280870-4280905)
chr2 (328-363)||(25995910-25995945)
chr2 (328-363)||(43823705-43823740)
chr2 (186-236)||(39548456-39548506)
chr2 (240-286)||(43823694-43823740)
chr2 (277-318)||(4579151-4579192)
chr2 (238-286)||(36635930-36635978)
chr2 (328-363)||(25193845-25193880)
chr2 (186-236)||(3928237-3928287)
chr2 (240-286)||(4962654-4962700)
chr2 (186-236)||(13081295-13081345)
chr2 (325-355)||(36635929-36635959)
chr2 (186-236)||(44341866-44341916)
chr2 (293-325)||(19246734-19246766)
chr2 (293-325)||(31711582-31711614)
chr2 (293-325)||(31783865-31783897)
[»] chr8 (31 HSPs)
chr8 (214-363)||(2750844-2750993)
chr8 (214-363)||(2750932-2751081)
chr8 (178-318)||(1209478-1209619)
chr8 (186-318)||(4835896-4836028)
chr8 (186-318)||(4841341-4841473)
chr8 (272-363)||(2751020-2751111)
chr8 (214-318)||(2750801-2750905)
chr8 (195-325)||(4835762-4835904)
chr8 (195-325)||(4841207-4841349)
chr8 (240-325)||(1209602-1209687)
chr8 (296-360)||(1209524-1209588)
chr8 (296-363)||(4835775-4835842)
chr8 (296-363)||(4841220-4841287)
chr8 (240-324)||(4835672-4835756)
chr8 (240-324)||(4841117-4841201)
chr8 (296-363)||(4835918-4835985)
chr8 (296-363)||(4841363-4841430)
chr8 (248-325)||(7058989-7059066)
chr8 (186-267)||(7058916-7058997)
chr8 (296-355)||(7058916-7058975)
chr8 (240-318)||(39657853-39657930)
chr8 (328-363)||(4835672-4835707)
chr8 (328-363)||(4841117-4841152)
chr8 (186-236)||(34647535-34647585)
chr8 (277-318)||(7058884-7058925)
chr8 (277-318)||(8551134-8551175)
chr8 (328-363)||(39657853-39657888)
chr8 (186-236)||(9852865-9852915)
chr8 (186-236)||(18026955-18027005)
chr8 (245-286)||(8551178-8551219)
chr8 (293-325)||(17656690-17656722)
[»] chr3 (37 HSPs)
chr3 (186-325)||(52986725-52986864)
chr3 (190-318)||(50754741-50754869)
chr3 (186-318)||(52986856-52986988)
chr3 (190-325)||(50754865-50755000)
chr3 (186-318)||(7044600-7044730)
chr3 (197-318)||(51361756-51361873)
chr3 (240-325)||(19384536-19384621)
chr3 (240-325)||(51361668-51361753)
chr3 (186-286)||(19384613-19384712)
chr3 (186-286)||(31852894-31852994)
chr3 (300-363)||(7044624-7044687)
chr3 (296-363)||(31852905-31852972)
chr3 (296-363)||(50754784-50754851)
chr3 (296-363)||(50754915-50754982)
chr3 (296-363)||(52986747-52986814)
chr3 (302-363)||(19384640-19384701)
chr3 (296-363)||(51361767-51361834)
chr3 (296-363)||(52986878-52986945)
chr3 (240-325)||(50754996-50755081)
chr3 (240-286)||(7044511-7044557)
chr3 (277-325)||(52986685-52986733)
chr3 (328-363)||(7044511-7044546)
chr3 (328-363)||(19384536-19384571)
chr3 (328-363)||(51361668-51361703)
chr3 (186-236)||(23755904-23755954)
chr3 (186-236)||(34562765-34562815)
chr3 (328-362)||(52986636-52986670)
chr3 (277-318)||(31852850-31852891)
chr3 (277-325)||(31852986-31853034)
chr3 (186-236)||(28299533-28299583)
chr3 (240-274)||(52986636-52986670)
chr3 (293-325)||(12974131-12974163)
chr3 (293-325)||(16653568-16653600)
chr3 (293-325)||(19012463-19012495)
chr3 (293-325)||(27446153-27446185)
chr3 (293-325)||(47728975-47729007)
chr3 (293-325)||(47924306-47924338)
[»] chr1 (37 HSPs)
chr1 (186-325)||(23174634-23174773)
chr1 (186-325)||(180519-180667)
chr1 (197-318)||(180398-180516)
chr1 (209-318)||(4097219-4097328)
chr1 (188-284)||(11422294-11422390)
chr1 (296-363)||(180578-180645)
chr1 (240-318)||(8401562-8401640)
chr1 (186-284)||(23174765-23174863)
chr1 (240-325)||(23174557-23174642)
chr1 (240-325)||(23921092-23921177)
chr1 (296-363)||(180438-180505)
chr1 (296-363)||(23174656-23174723)
chr1 (296-363)||(23174787-23174854)
chr1 (296-363)||(11422303-11422370)
chr1 (240-318)||(34370346-34370427)
chr1 (239-325)||(180659-180745)
chr1 (297-363)||(4097219-4097285)
chr1 (240-324)||(11422385-11422469)
chr1 (186-236)||(2741538-2741588)
chr1 (240-286)||(35197202-35197248)
chr1 (327-362)||(180710-180745)
chr1 (328-363)||(8401562-8401597)
chr1 (328-363)||(23921092-23921127)
chr1 (186-237)||(23921301-23921352)
chr1 (328-363)||(34370392-34370427)
chr1 (328-363)||(35197202-35197237)
chr1 (186-236)||(31084031-31084081)
chr1 (277-318)||(23174868-23174909)
chr1 (328-363)||(23174557-23174592)
chr1 (178-236)||(23921335-23921394)
chr1 (186-237)||(35197577-35197628)
chr1 (186-236)||(20506672-20506722)
chr1 (186-236)||(28322588-28322638)
chr1 (186-236)||(30788809-30788859)
chr1 (296-325)||(2741537-2741566)
chr1 (186-235)||(37642749-37642798)
chr1 (293-325)||(21256047-21256079)
[»] scaffold0338 (4 HSPs)
scaffold0338 (178-318)||(6204-6345)
scaffold0338 (240-325)||(6328-6413)
scaffold0338 (296-363)||(6247-6314)
scaffold0338 (328-363)||(6378-6413)
[»] chr7 (27 HSPs)
chr7 (178-318)||(15974083-15974224)
chr7 (178-318)||(48691727-48691871)
chr7 (178-318)||(48306036-48306174)
chr7 (186-318)||(46572806-46572932)
chr7 (245-325)||(15974020-15974100)
chr7 (240-324)||(48691855-48691939)
chr7 (240-325)||(46572729-46572814)
chr7 (296-363)||(15974114-15974181)
chr7 (240-325)||(48306157-48306242)
chr7 (296-363)||(46572828-46572895)
chr7 (296-363)||(48306076-48306143)
chr7 (296-363)||(48691773-48691840)
chr7 (178-237)||(32090051-32090111)
chr7 (328-363)||(48691904-48691939)
chr7 (186-236)||(39007198-39007248)
chr7 (240-286)||(44140241-44140287)
chr7 (186-236)||(48830229-48830279)
chr7 (178-242)||(48830180-48830245)
chr7 (178-236)||(27334939-27334998)
chr7 (328-363)||(44140241-44140276)
chr7 (328-363)||(46572729-46572764)
chr7 (328-363)||(48306207-48306242)
chr7 (329-363)||(15974016-15974050)
chr7 (293-325)||(6846719-6846751)
chr7 (293-325)||(30430566-30430598)
chr7 (293-325)||(41065909-41065941)
chr7 (293-325)||(43742321-43742353)
[»] chr6 (28 HSPs)
chr6 (186-318)||(24736802-24736934)
chr6 (186-318)||(33345562-33345694)
chr6 (186-318)||(877932-878064)
chr6 (186-324)||(878057-878207)
chr6 (296-363)||(878118-878185)
chr6 (296-363)||(24736824-24736891)
chr6 (296-363)||(877975-878042)
chr6 (296-363)||(33345584-33345651)
chr6 (245-325)||(33345490-33345570)
chr6 (245-325)||(878199-878285)
chr6 (186-236)||(4102598-4102648)
chr6 (186-236)||(4338150-4338200)
chr6 (245-283)||(18612176-18612214)
chr6 (329-363)||(18612184-18612218)
chr6 (280-325)||(24736765-24736810)
chr6 (327-363)||(24736712-24736748)
chr6 (178-236)||(4102632-4102691)
chr6 (328-363)||(29163552-29163587)
chr6 (329-363)||(878255-878289)
chr6 (186-236)||(7765041-7765091)
chr6 (186-236)||(15008226-15008276)
chr6 (186-236)||(16967536-16967586)
chr6 (186-236)||(22031715-22031765)
chr6 (240-282)||(29163545-29163587)
chr6 (186-236)||(30909220-30909270)
chr6 (293-325)||(10698717-10698749)
chr6 (239-275)||(24736712-24736748)
chr6 (305-337)||(34870043-34870075)
[»] chr4 (41 HSPs)
chr4 (186-318)||(638674-638806)
chr4 (190-325)||(10473321-10473456)
chr4 (186-314)||(45256575-45256700)
chr4 (186-318)||(26577487-26577622)
chr4 (240-318)||(51836475-51836553)
chr4 (178-318)||(10473192-10473338)
chr4 (240-325)||(10473452-10473537)
chr4 (186-283)||(38245638-38245735)
chr4 (240-325)||(38245727-38245812)
chr4 (240-325)||(50644508-50644593)
chr4 (240-324)||(638799-638883)
chr4 (296-363)||(638717-638784)
chr4 (296-363)||(10473371-10473438)
chr4 (296-363)||(45256611-45256678)
chr4 (297-363)||(38245646-38245712)
chr4 (240-325)||(26577411-26577495)
chr4 (296-363)||(10473241-10473307)
chr4 (296-363)||(26577509-26577579)
chr4 (277-324)||(45256693-45256740)
chr4 (325-363)||(9551769-9551807)
chr4 (328-363)||(638848-638883)
chr4 (328-363)||(10473502-10473537)
chr4 (328-363)||(51836475-51836510)
chr4 (186-236)||(29826068-29826118)
chr4 (238-275)||(9551770-9551807)
chr4 (178-236)||(6385748-6385807)
chr4 (186-237)||(38010522-38010573)
chr4 (328-359)||(45256758-45256789)
chr4 (240-283)||(48077099-48077142)
chr4 (328-363)||(48077099-48077134)
chr4 (328-363)||(50644558-50644593)
chr4 (240-286)||(6385515-6385561)
chr4 (186-236)||(49137491-49137541)
chr4 (277-318)||(26446801-26446842)
chr4 (293-325)||(6385733-6385765)
chr4 (293-325)||(12722878-12722910)
chr4 (293-325)||(17109859-17109891)
chr4 (293-325)||(21995742-21995774)
chr4 (293-325)||(25573595-25573627)
chr4 (328-356)||(38245784-38245812)
chr4 (293-325)||(54895476-54895508)
[»] chr5 (20 HSPs)
chr5 (178-318)||(2826247-2826388)
chr5 (178-286)||(28069453-28069562)
chr5 (191-283)||(34329906-34329998)
chr5 (296-363)||(28069484-28069551)
chr5 (296-363)||(34329914-34329981)
chr5 (240-319)||(34330001-34330080)
chr5 (296-363)||(2826278-2826345)
chr5 (252-325)||(2826191-2826264)
chr5 (186-237)||(8949493-8949544)
chr5 (187-232)||(33868780-33868825)
chr5 (328-363)||(16667845-16667880)
chr5 (186-237)||(16668204-16668255)
chr5 (328-363)||(34330045-34330080)
chr5 (240-282)||(16667845-16667887)
chr5 (292-325)||(28069437-28069470)
chr5 (293-325)||(11376521-11376553)
chr5 (293-325)||(22671868-22671900)
chr5 (293-325)||(23155714-23155746)
chr5 (293-325)||(23334930-23334962)
chr5 (305-337)||(30783512-30783544)
[»] scaffold0238 (4 HSPs)
scaffold0238 (178-318)||(24549-24702)
scaffold0238 (296-363)||(24580-24647)
scaffold0238 (239-325)||(24471-24566)
scaffold0238 (327-363)||(24471-24507)
[»] scaffold0194 (1 HSPs)
scaffold0194 (293-325)||(28457-28489)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 178 - 317
Target Start/End: Original strand, 4578782 - 4578921
Alignment:
Q  178 tgctgtggaatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgt 277  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  4578782 tgctgtggaatggtttttgtgagttgtactccaaacccattttgctgtggaaatgattttcagaattttcaatctcatcatcaacaccgtcgttcatcat 4578881  T
Q  278 catcaccgtaccggaatgccaaacccattttgctgtggaa 317  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  4578882 catcactgtaccggaatgccaaaaccattttgctgtggaa 4578921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 178 - 317
Target Start/End: Original strand, 4578912 - 4579051
Alignment:
Q  178 tgctgtggaatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgt 277  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |    
T  4578912 tgctgtggaatggtttttgtgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcat 4579011  T
Q  278 catcaccgtaccggaatgccaaacccattttgctgtggaa 317  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  4579012 catcaccgtaccggaatgccaaaaccattttgctgtggaa 4579051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 318
Target Start/End: Original strand, 18297398 - 18297539
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||||     
T  18297398 tgctgtggaaatggtttttgtgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatca 18297497  T
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||| |||||||||| |||||||||| ||||||    
T  18297498 tcatcaccgtacctgaatgccaaaaccattttgctatggaaa 18297539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 25193803 - 25193664
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| |||||||| ||||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  25193803 aatggtttctgtgagttgtactccaaacccattttgctgtgtaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccg 25193704  T
Q  286 taccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| |||||||||| |||||||||| || ||||||||||    
T  25193703 taccagaatgccaaaaccattttgctttgaaaatggtttc 25193664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 2264466 - 2264327
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||| |||||||||||| |||||||||| |||||||| ||||||||||||| || ||| |||||||||||||||||||| |||||||||| |||||||||    
T  2264466 aatgatttttgtgagttgtactccaaactcattttgctgtggaaatggtttccataatcttcaatctcatcatcaacactgtcgttcatcatcatcaccg 2264367  T
Q  286 taccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| |||||||||| |||||||||||| |||||||||||    
T  2264366 taccagaatgccaaaaccattttgctgtagaaatggtttc 2264327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 2264335 - 2264203
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| |||||||| ||||||||||| ||||||  |||||||||||||  ||||| |||||||||||||||||||  ||| |||||| |||||||||    
T  2264335 aatggtttctgtgagttgtactccaaaccaattttgttgtggaaatggtttctagaatcttcaatctcatcatcaacatagtcattcatcatcatcaccg 2264236  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||||| |||||||||||||||||    
T  2264235 taccggaatgccaaaaccattttgctgtggaaa 2264203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 14550645 - 14550754
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| || ||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||     
T  14550645 tgctgtggaaatgatttatgtgagttgtactccaaacccattttgctgtggaaatggtttccagaattttcaatctcatcatcaacaccgtcattcatca 14550744  T
Q  277 tcatcaccgt 286  Q
    ||||||||||    
T  14550745 tcatcaccgt 14550754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 25193672 - 25193576
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatca 282  Q
    |||||||| |||||||| ||||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||    
T  25193672 aatggtttctgtgagttgtactccaaacccattttgctgtgtaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatca 25193576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 4579042 - 4579148
Alignment:
Q  178 tgctgtggaatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgt 277  Q
    |||||||||||||||||||  |||| ||||||||||||||||||| ||||||||||||| |||||  |||||||||||||||||||||||| |||||| |    
T  4579042 tgctgtggaatggtttttg--agttgtactccaaacccattttgctgtggaaatggtttccagaagcttcaatctcatcatcaacaccgtcattcatcat 4579139  T
Q  278 catcaccgt 286  Q
    || ||||||    
T  4579140 caccaccgt 4579148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 2264543 - 2264463
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatg 320  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  2264543 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtaccggaatgccaaaaccattttgttgtggaaatg 2264463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 4578942 - 4579009
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4578942 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 4579009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 18297429 - 18297496
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18297429 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 18297496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 25193650 - 25193583
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25193650 ccaaacccattttgctgtgtaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 25193583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 25193781 - 25193714
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25193781 ccaaacccattttgctgtgtaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 25193714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 4578713 - 4578791
Alignment:
Q  239 agaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaa 317  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  4578713 agaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtacctgaatgccaaaaccattttgctgtggaa 4578791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 4579070 - 4579137
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  4579070 ccaaacccattttgctgtggaaatggtttccagaagcttcaatctcatcatcaacaccgtcattcatc 4579137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 14550676 - 14550743
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  14550676 ccaaacccattttgctgtggaaatggtttccagaattttcaatctcatcatcaacaccgtcattcatc 14550743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 25193880 - 25193795
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |||||||||| || ||||||||||    
T  25193880 gaatcttcaatctcatcatcaacaccgtggttcatcatcatcaccgtaccagaatgccaaaaccattttgctttgaaaatggtttc 25193795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 2264444 - 2264377
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  2264444 ccaaactcattttgctgtggaaatggtttccataatcttcaatctcatcatcaacactgtcgttcatc 2264377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 4578812 - 4578879
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  4578812 ccaaacccattttgctgtggaaatgattttcagaattttcaatctcatcatcaacaccgtcgttcatc 4578879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 2264313 - 2264258
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaaca 351  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  2264313 ccaaaccaattttgttgtggaaatggtttctagaatcttcaatctcatcatcaaca 2264258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 14550602 - 14550657
Alignment:
Q  265 cgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatg 320  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||    
T  14550602 cgtcgttcatcatcatcaccgtatcggaatgccaaaaccattttgctgtggaaatg 14550657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 18297367 - 18297414
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaatggttt 324  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  18297367 tcatcaccgtaccggaatgtcaaaaccattttgctgtggaaatggttt 18297414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 4280870 - 4280916
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgt 286  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  4280870 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgt 4280916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 4578713 - 4578749
Alignment:
Q  327 agaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||||||||||||    
T  4578713 agaatcttcaatctcatcatcaacaccgtcgttcatc 4578749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 25995945 - 25995901
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcacc 284  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||    
T  25995945 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcacc 25995901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 2264543 - 2264508
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  2264543 gaatcttcaatctcatcatcaacaccgtcgttcatc 2264508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 4280870 - 4280905
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  4280870 gaatcttcaatctcatcatcaacaccgtcgttcatc 4280905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 25995945 - 25995910
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  25995945 gaatcttcaatctcatcatcaacaccgtcgttcatc 25995910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 43823740 - 43823705
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  43823740 gaatcttcaatctcatcatcaacaccgtcgttcatc 43823705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 39548506 - 39548456
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||| |||||||||||||    
T  39548506 aatggtttatgtgagttgtactccaaaaccattttgctgtggaaatggttt 39548456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 43823740 - 43823694
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgt 286  Q
    |||| ||||||||||||||||||||||||||||||| | ||||||||    
T  43823740 gaatcttcaatctcatcatcaacaccgtcgttcatcatgatcaccgt 43823694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 4579151 - 4579192
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  4579151 tcatcaccgtaccggaatgccaaaatcattttgctgtggaaa 4579192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 36635930 - 36635978
Alignment:
Q  238 cagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgt 286  Q
    |||||| |||||||||||||||||||||||  |||||| ||||||||||    
T  36635930 cagaatcttcaatctcatcatcaacaccgtaattcatcatcatcaccgt 36635978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 25193880 - 25193845
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||| |||||||    
T  25193880 gaatcttcaatctcatcatcaacaccgtggttcatc 25193845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 3928287 - 3928237
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||||||||||  |||||||| ||||||||| ||| |||||||||    
T  3928287 aatggtttttgtgagttggactccaaaaccattttgctgtgaaaatggttt 3928237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 4962654 - 4962700
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgt 286  Q
    |||| |||||||||||||||||||  |||||||||| ||||||||||    
T  4962654 gaatcttcaatctcatcatcaacattgtcgttcatcatcatcaccgt 4962700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 13081295 - 13081345
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| ||||||||  |||||||| ||||||||| |||||||||||||    
T  13081295 aatggtttctgtgagttggactccaaaaccattttgctgtggaaatggttt 13081345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 355
Target Start/End: Original strand, 36635929 - 36635959
Alignment:
Q  325 ccagaatcttcaatctcatcatcaacaccgt 355  Q
    |||||||||||||||||||||||||||||||    
T  36635929 ccagaatcttcaatctcatcatcaacaccgt 36635959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 44341866 - 44341916
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||||||||||  |||||||| ||||||||| ||| |||||||||    
T  44341866 aatggtttttgtgagttggactccaaaaccattttgctgtgaaaatggttt 44341916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 19246766 - 19246734
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  19246766 atgccaaaaccattttgctgtggaaatggtttc 19246734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 31711614 - 31711582
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  31711614 atgccaaaaccattttgctgtggaaatggtttc 31711582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 31783897 - 31783865
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  31783897 atgccaaaaccattttgctgtggaaatggtttc 31783865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 214 - 363
Target Start/End: Complemental strand, 2750993 - 2750844
Alignment:
Q  214 ccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgt 313  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||  ||| ||||||||||||    
T  2750993 ccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtagttcatcatcatcacagtaccggaatgaaaaaaccattttgctgt 2750894  T
Q  314 ggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2750893 ggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 2750844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 214 - 363
Target Start/End: Complemental strand, 2751081 - 2750932
Alignment:
Q  214 ccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgt 313  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||  ||| ||||||||||||    
T  2751081 ccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtagttcatcatcatcacagtaccggaatgaaaaaaccattttgctgt 2750982  T
Q  314 ggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2750981 ggaaatggtttccagaatcttcaatctcatcatcaacaccgtagttcatc 2750932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 178 - 318
Target Start/End: Complemental strand, 1209619 - 1209478
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| || ||| |||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||     
T  1209619 tgctgtggaaatgatttctgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcgtca 1209520  T
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
     ||||||||||||||||||||||| |||||||||||||||||    
T  1209519 acatcaccgtaccggaatgccaaaaccattttgctgtggaaa 1209478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 4835896 - 4836028
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| | |||||| |||||||||| |||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||    
T  4835896 aatggtttctatgagttgtactccaaactcattttgctgtggaaatggtttccataatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccg 4835995  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||||| |||||||| ||||||||    
T  4835996 taccggaatgccaaaaccattttgttgtggaaa 4836028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 4841341 - 4841473
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| | |||||| |||||||||| |||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||    
T  4841341 aatggtttctatgagttgtactccaaactcattttgctgtggaaatggtttccataatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccg 4841440  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||||| |||||||| ||||||||    
T  4841441 taccggaatgccaaaaccattttgttgtggaaa 4841473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 272 - 363
Target Start/End: Complemental strand, 2751111 - 2751020
Alignment:
Q  272 catcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2751111 catcatcatcaccgtaccggaatgctaaaaccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtagttcatc 2751020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 318
Target Start/End: Complemental strand, 2750905 - 2750801
Alignment:
Q  214 ccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgt 313  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||| |||    
T  2750905 ccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcacagtaccggaatgtcaaaaccattttgatgt 2750806  T
Q  314 ggaaa 318  Q
    |||||    
T  2750805 ggaaa 2750801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 325
Target Start/End: Original strand, 4835762 - 4835904
Alignment:
Q  195 tgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgt------------catca 282  Q
    |||||||| ||||||||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |            |||||    
T  4835762 tgtgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtcaccatca 4835861  T
Q  283 ccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  4835862 ccgtaccggaatgccaaaaccatttttctgtggaaatggtttc 4835904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 325
Target Start/End: Original strand, 4841207 - 4841349
Alignment:
Q  195 tgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgt------------catca 282  Q
    |||||||| ||||||||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |            |||||    
T  4841207 tgtgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtcaccatca 4841306  T
Q  283 ccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  4841307 ccgtaccggaatgccaaaaccatttttctgtggaaatggtttc 4841349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 1209687 - 1209602
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  1209687 gaattttcaatctcatcatcaacatcgtcgttcatcaacatcaccgtaccggaatgccaaaaccattttgctgtggaaatgatttc 1209602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 1209588 - 1209524
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttc 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1209588 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttc 1209524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 4835775 - 4835842
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4835775 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 4835842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 4841220 - 4841287
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4841220 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 4841287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 4835672 - 4835756
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggttt 324  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||| |||||||||||||||    
T  4835672 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtatcagaatgccaaaaccatttttctgtggaaatggttt 4835756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 4841117 - 4841201
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggttt 324  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||| |||||||||||||||    
T  4841117 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtatcagaatgccaaaaccatttttctgtggaaatggttt 4841201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 4835918 - 4835985
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4835918 ccaaactcattttgctgtggaaatggtttccataatcttcaatctcatcatcaacaccgtcgttcatc 4835985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 4841363 - 4841430
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4841363 ccaaactcattttgctgtggaaatggtttccataatcttcaatctcatcatcaacaccgtcgttcatc 4841430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 7059066 - 7058989
Alignment:
Q  248 aatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||| |||||||||||||    
T  7059066 aatctcatcatcaacactgtcgttcatcatcatcaccgtaccggaatgtcaaaaccattttgctatggaaatggtttc 7058989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 7058997 - 7058916
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgt 267  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||| ||||||    
T  7058997 aatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttctatctcatcatcatcaccgt 7058916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 7058975 - 7058916
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgt 355  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  7058975 ccaaacccattttgctgtggaaatggtttccagaatcttctatctcatcatcatcaccgt 7058916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 39657853 - 39657930
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||   |||||||||||||||    
T  39657853 gaatcttcaatctcatcatcaacaccatcgttcatcatcatcaccgtaccggaatgccaaa-aaattttgctgtggaaa 39657930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 4835672 - 4835707
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  4835672 gaatcttcaatctcatcatcaacaccgtcgttcatc 4835707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 4841117 - 4841152
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  4841117 gaatcttcaatctcatcatcaacaccgtcgttcatc 4841152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 34647535 - 34647585
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||| |||||||||||||    
T  34647535 aatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggttt 34647585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 7058925 - 7058884
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  7058925 tcatcaccgtaccggaatgccaaaaccattttcctgtggaaa 7058884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 8551175 - 8551134
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  8551175 tcatcaccgtaccggaatgccaaaaccattttgttgtggaaa 8551134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 39657853 - 39657888
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||| |||||||||    
T  39657853 gaatcttcaatctcatcatcaacaccatcgttcatc 39657888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 9852915 - 9852865
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| |||||||||  |||||||| |||||||||||||    
T  9852915 aatggtttctgtgagttgtactccaaaatcattttgctgtggaaatggttt 9852865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 18027005 - 18026955
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||||||||||  |||||||| ||||||||| ||| |||||||||    
T  18027005 aatggtttttgtgagttggactccaaaaccattttgctgtgaaaatggttt 18026955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 8551219 - 8551178
Alignment:
Q  245 ttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgt 286  Q
    ||||||||||  ||||||||||||||||||| ||||||||||    
T  8551219 ttcaatctcaatatcaacaccgtcgttcatcatcatcaccgt 8551178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 17656722 - 17656690
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  17656722 atgccaaaaccattttgctgtggaaatggtttc 17656690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 186 - 325
Target Start/End: Original strand, 52986725 - 52986864
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||    
T  52986725 aatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccaaaatcttgaatctcatcatcaacaccgtcgttcatcgtcatcaccg 52986824  T
Q  286 taccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  52986825 taccggaatgccaaaaccattttactgtggaaatggtttc 52986864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 50754869 - 50754741
Alignment:
Q  190 gtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtacc 289  Q
    |||| |||||||| ||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  50754869 gtttctgtgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacactgtcgttcatcatcatcaccgtacc 50754770  T
Q  290 ggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||| |||||||||||||||||    
T  50754769 ggaatgccaaaaccattttgctgtggaaa 50754741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 52986856 - 52986988
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| | |||||| ||||||||||||||||||| ||||||||||||| |||||| || |||||||||||||| ||||||||||||| |||||||||    
T  52986856 aatggtttctatgagttgtactccaaacccattttgcagtggaaatggtttccagaatcttaaatctcatcatcaataccgtcgttcatcatcatcaccg 52986955  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||||| |||||||||||||||||    
T  52986956 taccggaatgccaaaaccattttgctgtggaaa 52986988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 50755000 - 50754865
Alignment:
Q  190 gtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtacc 289  Q
    |||| |||||||| ||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  50755000 gtttctgtgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacactgtcgttcatcatcatcaccgtacc 50754901  T
Q  290 ggaatgccaaacccattttgctgtggaaatggtttc 325  Q
     |||||||||| |||||| ||| ||||||| |||||    
T  50754900 agaatgccaaaaccatttagctatggaaatagtttc 50754865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 7044600 - 7044730
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||| ||| |||||||| |||||||  |||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  7044600 aatgatttatgtgagttgtactcca--cccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccg 7044697  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||||| |||||||||| ||||||    
T  7044698 taccggaatgccaaaaccattttgctatggaaa 7044730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 51361756 - 51361873
Alignment:
Q  197 tgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgc 296  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||||| || || |||||||||||||||| |||||||| |||    |||||||||||||    
T  51361756 tgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttgaacctcatcatcaacaccgccgttcatcatca----cgtaccggaatgc 51361851  T
Q  297 caaacccattttgctgtggaaa 318  Q
    |||| |||||||||||||||||    
T  51361852 caaaaccattttgctgtggaaa 51361873  T

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Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 19384536 - 19384621
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  19384536 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtaccgaaatgccaaaaccatttttctgtggaaatggtttc 19384621  T

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Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 51361668 - 51361753
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  51361668 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtaccggaatgccaaaaccattttgttgtggaaatgatttc 51361753  T

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Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 19384613 - 19384712
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| |||||||| ||||||||||| ||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  19384613 aatggtttctgtgagttgtactccaaacc-attttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccg 19384711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 31852994 - 31852894
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||| ||||||||||  ||||||||    
T  31852994 aatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccataatcttcaatctcatcatcaacactgtcgttcatcaccatcaccg 31852895  T
Q  286 t 286  Q
    |    
T  31852894 t 31852894  T

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Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 363
Target Start/End: Original strand, 7044624 - 7044687
Alignment:
Q  300 acccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7044624 acccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 7044687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 31852972 - 31852905
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  31852972 ccaaacccattttgctgtggaaatggtttccataatcttcaatctcatcatcaacactgtcgttcatc 31852905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 50754851 - 50754784
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50754851 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacactgtcgttcatc 50754784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 50754982 - 50754915
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50754982 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacactgtcgttcatc 50754915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 52986747 - 52986814
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  52986747 ccaaacccattttgctgtggaaatggtttccaaaatcttgaatctcatcatcaacaccgtcgttcatc 52986814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 19384640 - 19384701
Alignment:
Q  302 ccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19384640 ccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 19384701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 51361767 - 51361834
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||    
T  51361767 ccaaacccattttgctgtggaaatggtttccagaatcttgaacctcatcatcaacaccgccgttcatc 51361834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 52986878 - 52986945
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  52986878 ccaaacccattttgcagtggaaatggtttccagaatcttaaatctcatcatcaataccgtcgttcatc 52986945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 50755081 - 50754996
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| ||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||| |||||| ||| ||||||| |||||    
T  50755081 gaatcttcaatctcattatcaacagcgtcgttcatcatcatcaccgtaccagaatgccaaaaccatttagctatggaaatagtttc 50754996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 7044511 - 7044557
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgt 286  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  7044511 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgt 7044557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 52986685 - 52986733
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  52986685 tcatcaccataccggaatgccaaaaccattttgctatggaaatggtttc 52986733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 7044511 - 7044546
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  7044511 gaatcttcaatctcatcatcaacaccgtcgttcatc 7044546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 19384536 - 19384571
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  19384536 gaatcttcaatctcatcatcaacaccgtcgttcatc 19384571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 51361668 - 51361703
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  51361668 gaatcttcaatctcatcatcaacaccgtcgttcatc 51361703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 23755954 - 23755904
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||| |||||||||||||    
T  23755954 aatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggttt 23755904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 34562765 - 34562815
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||| |||||||||||||    
T  34562765 aatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggttt 34562815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 362
Target Start/End: Original strand, 52986636 - 52986670
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcat 362  Q
    |||||||||||||||||||||||||||||||||||    
T  52986636 gaatcttcaatctcatcatcaacaccgtcgttcat 52986670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 31852891 - 31852850
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  31852891 tcatcaccgtaccggaatgccaaaaccattttgttgtggaaa 31852850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 31853034 - 31852986
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||||||||||||||||||  |||||  ||||||||||||||||    
T  31853034 tcatcaccgtaccggaatgccaaaatcatttatctgtggaaatggtttc 31852986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 28299533 - 28299583
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||  |||||||||||||    
T  28299533 aatggtttctgtgagttgtactccaaaaccattttgttgtggaaatggttt 28299583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 52986636 - 52986670
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcat 274  Q
    |||| ||||||||||||||||||||||||||||||    
T  52986636 gaatcttcaatctcatcatcaacaccgtcgttcat 52986670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 12974131 - 12974163
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  12974131 atgccaaaaccattttgctgtggaaatggtttc 12974163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 16653600 - 16653568
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  16653600 atgccaaaaccattttgctgtggaaatggtttc 16653568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 19012495 - 19012463
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  19012495 atgccaaaaccattttgctgtggaaatggtttc 19012463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 27446153 - 27446185
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  27446153 atgccaaaaccattttgctgtggaaatggtttc 27446185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 47729007 - 47728975
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  47729007 atgccaaaaccattttgctgtggaaatggtttc 47728975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 47924306 - 47924338
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  47924306 atgccaaaaccattttgctgtggaaatggtttc 47924338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 186 - 325
Target Start/End: Original strand, 23174634 - 23174773
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||||||    
T  23174634 aatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacactgtcgttcatcatcatcaccg 23174733  T
Q  286 taccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    || |||||||||||| |||||||| |||||||||||||||    
T  23174734 tatcggaatgccaaaaccattttgttgtggaaatggtttc 23174773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 180667 - 180519
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcat---------cg 276  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||         ||    
T  180667 aatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccg 180568  T
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||||||||||||||||||| ||||||| |||||||||| |||||    
T  180567 tcatcaccgtaccggaatgccaaaaccatttttctgtggaaattgtttc 180519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 318
Target Start/End: Complemental strand, 180516 - 180398
Alignment:
Q  197 tgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgc 296  Q
    |||||| ||||||||||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||||   ||||||| ||||||||||||    
T  180516 tgagttgtactccaaacccattttactgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttca---tcatcactgtaccggaatgc 180420  T
Q  297 caaacccattttgctgtggaaa 318  Q
    |||| |||||||||||||||||    
T  180419 caaaaccattttgctgtggaaa 180398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 318
Target Start/End: Original strand, 4097219 - 4097328
Alignment:
Q  209 caaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccatttt 308  Q
    |||||| ||||||| ||||||||||||| |||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||    
T  4097219 caaaccaattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacatcatcgttcatcatcatcaccgtaccggaatgccaaaacaatttt 4097318  T
Q  309 gctgtggaaa 318  Q
    | ||||||||    
T  4097319 gttgtggaaa 4097328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 11422390 - 11422294
Alignment:
Q  188 tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcacc 284  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||    
T  11422390 tggtttgtgtgagttgtactccaaacccattttgctgtggaaatggttttcagaatcttcaatctcatcattaacatcgtcgttcatcatcatcacc 11422294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 180645 - 180578
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  180645 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 180578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 8401562 - 8401640
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  8401562 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtaccggaatgccaaaaccattttgctgtggaaa 8401640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 23174765 - 23174863
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcacc 284  Q
    |||||||| |||||||| ||||||||||||||||||  ||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  23174765 aatggtttctgtgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacatcgtcgttcatcatcatcacc 23174863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 23174557 - 23174642
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  23174557 gaatcttcaatctcatcatcaacaccgccgttcatcatcatcaccgtaccggaatgccaaaaccattttgttgtggaaatggtttc 23174642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 23921092 - 23921177
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  23921092 gaatcttcaatctcatcatcaacaccgtcgttcatcattatcaccgtactggaatgccaaaaccattttgctgtggaaatggtttc 23921177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 180505 - 180438
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  180505 ccaaacccattttactgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 180438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 23174656 - 23174723
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23174656 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacactgtcgttcatc 23174723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 23174787 - 23174854
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23174787 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacatcgtcgttcatc 23174854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 11422370 - 11422303
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||    
T  11422370 ccaaacccattttgctgtggaaatggttttcagaatcttcaatctcatcattaacatcgtcgttcatc 11422303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 34370427 - 34370346
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatca---ccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||| ||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||| |||||||||||||||||    
T  34370427 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcatcaccgtaccggaatgccaaaaccattttgctgtggaaa 34370346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 180745 - 180659
Alignment:
Q  239 agaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||| ||| ||||  ||||||||||    
T  180745 agaatcttcaatctcatcatcaacaccgtcgttcataatcatcaccgtaccggaatgccaaaaccagttttctgtaaaaatggtttc 180659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 4097219 - 4097285
Alignment:
Q  297 caaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  4097219 caaaccaattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacatcatcgttcatc 4097285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 11422469 - 11422385
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggttt 324  Q
    |||| |||||||||||| ||||||  |||||||||| |||||||||||||| |||||||||  ||||||| ||||||| ||||||    
T  11422469 gaatcttcaatctcatcttcaacattgtcgttcatcatcatcaccgtaccgaaatgccaaaatcattttgatgtggaagtggttt 11422385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 2741588 - 2741538
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  2741588 aatggtttctgtgagttgtactccaaacccattttgctgtggaaatggttt 2741538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 35197202 - 35197248
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgt 286  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  35197202 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgt 35197248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 180745 - 180710
Alignment:
Q  327 agaatcttcaatctcatcatcaacaccgtcgttcat 362  Q
    ||||||||||||||||||||||||||||||||||||    
T  180745 agaatcttcaatctcatcatcaacaccgtcgttcat 180710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 8401562 - 8401597
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  8401562 gaatcttcaatctcatcatcaacaccgtcgttcatc 8401597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 23921092 - 23921127
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  23921092 gaatcttcaatctcatcatcaacaccgtcgttcatc 23921127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 23921301 - 23921352
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggtttt 237  Q
    |||||||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  23921301 aatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggtttt 23921352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 34370427 - 34370392
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  34370427 gaatcttcaatctcatcatcaacaccgtcgttcatc 34370392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 35197202 - 35197237
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  35197202 gaatcttcaatctcatcatcaacaccgtcgttcatc 35197237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 31084081 - 31084031
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||| |||||||||||||    
T  31084081 aatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggttt 31084031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 23174868 - 23174909
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  23174868 tcatcaccgtaccgaaatgccaaaaccattttgctgtggaaa 23174909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 23174557 - 23174592
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||| ||||||||    
T  23174557 gaatcttcaatctcatcatcaacaccgccgttcatc 23174592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 23921335 - 23921394
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||| ||||||||||||||| |||| |||| ||||||||| |||| ||||||||    
T  23921335 tgctgtggaaatggtttttgtgagttgtacttcaaaaccattttgctgtgggaatggttt 23921394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 35197577 - 35197628
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggtttt 237  Q
    |||||||| |||||||| || |||||| ||||||||| ||||||||||||||    
T  35197577 aatggtttctgtgagttgtagtccaaaaccattttgctgtggaaatggtttt 35197628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 20506672 - 20506722
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||  |||||||||||||    
T  20506672 aatggtttatgtgagttgtactccaaaaccattttgttgtggaaatggttt 20506722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 28322588 - 28322638
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| ||||||||  |||||||| ||||||||| |||||||||||||    
T  28322588 aatggtttctgtgagttggactccaaaaccattttgctgtggaaatggttt 28322638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 30788859 - 30788809
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||||||||||  |||||||| ||||||||| ||| |||||||||    
T  30788859 aatggtttttgtgagttggactccaaaaccattttgctgtgaaaatggttt 30788809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 325
Target Start/End: Complemental strand, 2741566 - 2741537
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||||||||||||||||||||||||    
T  2741566 ccaaacccattttgctgtggaaatggtttc 2741537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 37642798 - 37642749
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggtt 235  Q
    |||||||| |||||||| ||||||||| ||||||||  ||||||||||||    
T  37642798 aatggtttctgtgagttgtactccaaaaccattttgtcgtggaaatggtt 37642749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 21256047 - 21256079
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  21256047 atgccaaaaccattttgctgtggaaatggtttc 21256079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 318
Target Start/End: Complemental strand, 6345 - 6204
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||     
T  6345 tgctgtggaaatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttcaatttcatcatcaacaccgtcgttcatca 6246  T
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  6245 tcatcaccgtaccggaatgccaaaaccattttgttgtggaaa 6204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 6413 - 6328
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6413 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtaccggaatgccaaaaccattttgctgtggaaatggtttc 6328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 6314 - 6247
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6314 ccaaacccattttgctgtggaaatggtttccagaatcttcaatttcatcatcaacaccgtcgttcatc 6247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 6413 - 6378
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  6413 gaatcttcaatctcatcatcaacaccgtcgttcatc 6378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 318
Target Start/End: Original strand, 15974083 - 15974224
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| |||||| |||||||| ||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||     
T  15974083 tgctgtggaaatggtttctgtgagttgtactccaaatccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatca 15974182  T
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  15974183 tcatcaccgtaccggaatgccaaaaccattttgccgtggaaa 15974224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 178 - 318
Target Start/End: Complemental strand, 48691871 - 48691727
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgtt---ca 273  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||||  |||||||||||| |||||| |||||||||||||||||||||||||||   ||    
T  48691871 tgctgtggaaatggtttttgtgagttgtactccaaacctattttgctatggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatca 48691772  T
Q  274 tcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    || |||||||||||||||||||||||| |||||||||||||||||    
T  48691771 tcatcatcaccgtaccggaatgccaaaaccattttgctgtggaaa 48691727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 178 - 318
Target Start/End: Complemental strand, 48306174 - 48306036
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| |||||| |||||||| ||||||||||||||||||  ||||||||||||| |||||| ||||||||||| |||||||||||||||||       
T  48306174 tgctgtggaaatggtttctgtgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcattatcaacaccgtcgttca--- 48306078  T
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  48306077 tcatcaccgtaccagaatgccaaaaccattttgctgtggaaa 48306036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 46572806 - 46572932
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| | |||||| ||||||||||||||||||  ||||||||||||| |||||| ||||||||||||||||||| ||||||      |||||||||    
T  46572806 aatggtttctatgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacatcgtcgt------tcatcaccg 46572899  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    ||| ||||||||||| |||||||||||||||||    
T  46572900 tactggaatgccaaaaccattttgctgtggaaa 46572932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 15974020 - 15974100
Alignment:
Q  245 ttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15974020 ttcaatctcatcatcaacatcgtcgttcatcatcatcaccgtaccggaatgccaaaaccattttgctgtggaaatggtttc 15974100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 48691939 - 48691855
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggttt 324  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  48691939 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtaccggaatgtcaaaaccattttgctgtggaaatggttt 48691855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 46572729 - 46572814
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  46572729 gaatcttcaatctcatcatcaacactgtcgttcatcatcatcaccgtaccggaatgccaaaaccattttgttgtggaaatggtttc 46572814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 15974114 - 15974181
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15974114 ccaaatccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 15974181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 48306242 - 48306157
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  48306242 gaatcttcagtctcatcatcaacaccgtcgttcatcatcaacaccgtaccggaatgccaaaatcattttgctgtggaaatggtttc 48306157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 46572828 - 46572895
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46572828 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacatcgtcgttcatc 46572895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 48306143 - 48306076
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48306143 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcattatcaacaccgtcgttcatc 48306076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 48691840 - 48691773
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48691840 ccaaacctattttgctatggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 48691773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 32090051 - 32090111
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggtttt 237  Q
    |||||||||| |||||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  32090051 tgctgtggaaatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggtttt 32090111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 48691939 - 48691904
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  48691939 gaatcttcaatctcatcatcaacaccgtcgttcatc 48691904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 39007198 - 39007248
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||| |||||||||||||    
T  39007198 aatggtttatgtgagttgtactccaaaaccattttgctgtggaaatggttt 39007248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 44140241 - 44140287
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgt 286  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||    
T  44140241 gaatcttcaatctcatcatcaacacagtcgttcatcatcatcaccgt 44140287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 48830279 - 48830229
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||| |||||||||||||    
T  48830279 aatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggttt 48830229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 48830245 - 48830180
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaa 242  Q
    |||||||||| |||||| |||| ||| ||||||||| ||||||||| |||| ||||||||||||||    
T  48830245 tgctgtggaaatggtttctgtgtgttgtactccaaaaccattttgctgtgggaatggttttcagaa 48830180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 27334939 - 27334998
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||| |||||| ||||||||  |||||||| ||||||||| |||||||||||||    
T  27334939 tgctgtggaaatggtttctgtgagttggactccaaaaccattttgctgtggaaatggttt 27334998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 44140241 - 44140276
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44140241 gaatcttcaatctcatcatcaacacagtcgttcatc 44140276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 46572729 - 46572764
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||| ||||||||||    
T  46572729 gaatcttcaatctcatcatcaacactgtcgttcatc 46572764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 48306242 - 48306207
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||| ||||||||||||||||||||||||||    
T  48306242 gaatcttcagtctcatcatcaacaccgtcgttcatc 48306207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 15974016 - 15974050
Alignment:
Q  329 aatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||| |||||||||||    
T  15974016 aatcttcaatctcatcatcaacatcgtcgttcatc 15974050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 6846719 - 6846751
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  6846719 atgccaaaaccattttgctgtggaaatggtttc 6846751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 30430598 - 30430566
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  30430598 atgccaaaaccattttgctgtggaaatggtttc 30430566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 41065909 - 41065941
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  41065909 atgccaaaaccattttgctgtggaaatggtttc 41065941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 43742353 - 43742321
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  43742353 atgccaaaaccattttgctgtggaaatggtttc 43742321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 24736802 - 24736934
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  24736802 aatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccg 24736901  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    |||  |||||||||| |||||||||||||||||    
T  24736902 tactagaatgccaaaaccattttgctgtggaaa 24736934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 33345562 - 33345694
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||    
T  33345562 aatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccataatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccg 33345661  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||||| |||||||| ||||||||    
T  33345662 taccggaatgccaaaaccattttgttgtggaaa 33345694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 878064 - 877932
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||||||||    
T  878064 aatggtttttgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttcaatttcatcatcaacaccgtcgttcatcatcatcaccg 877965  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    || | |||||||||| ||||| | |||||||||    
T  877964 tatcagaatgccaaaaccattatactgtggaaa 877932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 878207 - 878057
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcacc- 284  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||     
T  878207 aatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcacca 878108  T
Q  285 -----------gtaccggaatgccaaacccattttgctgtggaaatggttt 324  Q
               |||||||||||||||| |||||||| ||||||||||||||    
T  878107 tcatcatcactgtaccggaatgccaaaaccattttgttgtggaaatggttt 878057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 878185 - 878118
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  878185 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 878118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 24736824 - 24736891
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24736824 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 24736891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 878042 - 877975
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  878042 ccaaacccattttgctgtggaaatggtttccagaatcttcaatttcatcatcaacaccgtcgttcatc 877975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 33345584 - 33345651
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33345584 ccaaacccattttgctgtggaaatggtttccataatcttcaatctcatcatcaacaccgtcgttcatc 33345651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 33345490 - 33345570
Alignment:
Q  245 ttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||||| |||||||| |||||||||| |||||  ||||||||||||||||| ||||||  ||||||||||||||||    
T  33345490 ttcaatctcattatcaacactgtcgttcatcatcatcgtcgtaccggaatgccaaaaccatttatctgtggaaatggtttc 33345570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 878285 - 878199
Alignment:
Q  245 ttcaatctcatcatcaacaccgtcgttca------tcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||||||||||||||||||| |||      || ||||||||||||||||||| |||| |||||||| |||| ||||||||||    
T  878285 ttcaatctcatcatcaacaccgtcgctcatcatcgtcatcatcaccgtaccggaatgtcaaaaccattttgttgtgaaaatggtttc 878199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 4102598 - 4102648
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||| |||||||||||||    
T  4102598 aatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggttt 4102648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 4338150 - 4338200
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||||||||||  |||||||| ||||||||| |||||||||||||    
T  4338150 aatggtttttgtgagttggactccaaaaccattttgcagtggaaatggttt 4338200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 18612214 - 18612176
Alignment:
Q  245 ttcaatctcatcatcaacaccgtcgttcatcgtcatcac 283  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  18612214 ttcaatctcatcatcaacaccgtcgttcatcatcatcac 18612176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 18612218 - 18612184
Alignment:
Q  329 aatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||||||||||    
T  18612218 aatcttcaatctcatcatcaacaccgtcgttcatc 18612184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 24736765 - 24736810
Alignment:
Q  280 tcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||| ||||||||||| |||||||| |||||||||||||||    
T  24736765 tcaccgtactggaatgccaaaaccattttgttgtggaaatggtttc 24736810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 24736712 - 24736748
Alignment:
Q  327 agaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||| ||||||||||    
T  24736712 agaatcttcaatctcatcatcaacactgtcgttcatc 24736748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 4102632 - 4102691
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||| |||||| |||||||| |||| |||| ||||||||| |||||||||||||    
T  4102632 tgctgtggaaatggtttatgtgagttgtacttcaaaaccattttgctgtggaaatggttt 4102691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 29163587 - 29163552
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||| |||||||||||||||||    
T  29163587 gaatcttcaatctcatcaacaacaccgtcgttcatc 29163552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 878289 - 878255
Alignment:
Q  329 aatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||| |||||    
T  878289 aatcttcaatctcatcatcaacaccgtcgctcatc 878255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 7765091 - 7765041
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    ||||||||||||||||| |||||||||  |||||||| |||||||| ||||    
T  7765091 aatggtttttgtgagttgtactccaaaatcattttgctgtggaaatagttt 7765041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 15008226 - 15008276
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||  |||||||| ||||||||| ||||||||| |||||||||||||    
T  15008226 aatggttactgtgagttgtactccaaaaccattttgctgtggaaatggttt 15008276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 16967536 - 16967586
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    ||||||||  ||||||| ||||||||| ||||||||| |||||||||||||    
T  16967536 aatggtttcagtgagttgtactccaaaaccattttgctgtggaaatggttt 16967586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 22031715 - 22031765
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||||||||||  |||||||| ||||||||| ||| |||||||||    
T  22031715 aatggtttttgtgagttggactccaaaaccattttgctgtgaaaatggttt 22031765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 29163587 - 29163545
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatca 282  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||    
T  29163587 gaatcttcaatctcatcaacaacaccgtcgttcatcatcatca 29163545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 30909270 - 30909220
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| |||||||||  ||||||||||||    
T  30909270 aatggtttctgtgagttgtactccaaaaccattttgctatggaaatggttt 30909220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 10698717 - 10698749
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  10698717 atgccaaaaccattttgctgtggaaatggtttc 10698749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 24736712 - 24736748
Alignment:
Q  239 agaattttcaatctcatcatcaacaccgtcgttcatc 275  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  24736712 agaatcttcaatctcatcatcaacactgtcgttcatc 24736748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 34870043 - 34870075
Alignment:
Q  305 ttttgctgtggaaatggtttccagaatcttcaa 337  Q
    ||||| |||||||||||||||||||||||||||    
T  34870043 ttttgttgtggaaatggtttccagaatcttcaa 34870075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 638806 - 638674
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||| |||||| |||||||||    
T  638806 aatggtttttgtgagttgtactccaaacccattttgctgtggaaatggtttctagaatcttcaatctcatcatcaacaccgtcattcatcatcatcaccg 638707  T
Q  286 taccggaatgccaaacccattttgctgtggaaa 318  Q
    ||||||||||||||| |||||||| ||||||||    
T  638706 taccggaatgccaaaaccattttgatgtggaaa 638674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 10473456 - 10473321
Alignment:
Q  190 gtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtacc 289  Q
    |||| |||||||| ||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||| |||||    
T  10473456 gtttctgtgagttgtactccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacactgtcgttcatcatcatcactgtacc 10473357  T
Q  290 ggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10473356 ggaatgccaaaaccattttgctgtggaaatggtttc 10473321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 45256700 - 45256575
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccg 285  Q
    |||||||| |||||||| || |||||||||||||||  |||||||||||||  ||||| |||||||||||||||||||||||||||||   |||||||||    
T  45256700 aatggtttatgtgagttgtattccaaacccattttgttgtggaaatggtttcgagaatcttcaatctcatcatcaacaccgtcgttca---tcatcaccg 45256604  T
Q  286 taccggaatgccaaacccattttgctgtg 314  Q
     |||||||||||||| |||||||||||||    
T  45256603 gaccggaatgccaaaaccattttgctgtg 45256575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 26577487 - 26577622
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctc---atcatcaacaccgtcgttcatcgtcatca 282  Q
    |||||||| |||||||| || |||||||||||||||  ||||||||||||| |||||| |||||||||   ||||||||||  |||||||||| ||||||    
T  26577487 aatggtttctgtgagttgtaatccaaacccattttgatgtggaaatggtttccagaatcttcaatctcgtcatcatcaacatagtcgttcatcatcatca 26577586  T
Q  283 ccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||||||||||||| |||||||| ||||||||    
T  26577587 ccgtaccggaatgccaaaaccattttgttgtggaaa 26577622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 51836475 - 51836553
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  51836475 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtaccggaatgccaaaaccattttgctgtggaaa 51836553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 318
Target Start/End: Complemental strand, 10473338 - 10473192
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| |||||| |||||||| ||||||||||||||||||  |||||| |||||| |||||| ||||||||||||||||||| ||| |||||||     
T  10473338 tgctgtggaaatggtttctgtgagttgtactccaaacccattttgttgtggaa-tggtttccagaatcttcaatctcatcatcaacatcgttgttcatca 10473240  T
Q  277 tcatcac------cgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||      ||||||||||||||||| |||||||| ||||||||    
T  10473239 tcatcaccgtcagcgtaccggaatgccaaaaccattttgttgtggaaa 10473192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 10473537 - 10473452
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| ||||||||| |||||    
T  10473537 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcaccgtaccggaatgccaaaactattttgttgtggaaatagtttc 10473452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 38245735 - 38245638
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcac 283  Q
    |||||||| |||||||| |||| |||||||||||||  ||||||||||||| |||||| || |||||||||||||||||||||||||||| |||||||    
T  38245735 aatggtttctgtgagttgtactacaaacccattttgttgtggaaatggtttccagaatcttaaatctcatcatcaacaccgtcgttcatcatcatcac 38245638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 38245812 - 38245727
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38245812 gaatcttcaatctcatcatcaacaccgtcattgatcatcatcaccgtaccggaatgccaaaaccattttgctgtgtaaatggtttc 38245727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 50644593 - 50644508
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| ||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50644593 gaatcttcaatctcatcatcaataccgtcgttcatcataatcaccgtaccagaatgccaaaaccattttgctgtggaaatggtttc 50644508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 638883 - 638799
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggttt 324  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| || ||||||||||||    
T  638883 gaatcttcaatctcatcatcaacaccgtcgttcatcatcatcactgtaccggaatgccaaaaccatttttctatggaaatggttt 638799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 638784 - 638717
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  638784 ccaaacccattttgctgtggaaatggtttctagaatcttcaatctcatcatcaacaccgtcattcatc 638717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 10473438 - 10473371
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10473438 ccaaacccattttgttgtggaaatggtttccagaatcttcaatctcatcatcaacactgtcgttcatc 10473371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 45256678 - 45256611
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45256678 ccaaacccattttgttgtggaaatggtttcgagaatcttcaatctcatcatcaacaccgtcgttcatc 45256611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 38245712 - 38245646
Alignment:
Q  297 caaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38245712 caaacccattttgttgtggaaatggtttccagaatcttaaatctcatcatcaacaccgtcgttcatc 38245646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 26577411 - 26577495
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||| |||||||||||||||||||||||  |||||| |||||| ||||||||||||||| | |||||||| |||||||||||||||    
T  26577411 gaatcttcaatctcatcatcaacaccgtatttcatcatcatcatcgtaccggaatgccata-ccattttgttgtggaaatggtttc 26577495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 10473307 - 10473241
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||    
T  10473307 ccaaacccattttgttgtggaa-tggtttccagaatcttcaatctcatcatcaacatcgttgttcatc 10473241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 26577509 - 26577579
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctc---atcatcaacaccgtcgttcatc 363  Q
    |||||||||||||| |||||||||||||||||||||||||||||||   ||||||||||  ||||||||||    
T  26577509 ccaaacccattttgatgtggaaatggtttccagaatcttcaatctcgtcatcatcaacatagtcgttcatc 26577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 45256740 - 45256693
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaatggttt 324  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  45256740 tcatcaccgtaccggaatgccaaaaccattttgctgtagaaatggttt 45256693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 9551769 - 9551807
Alignment:
Q  325 ccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9551769 ccagaatcttcaatctcatcatcaacaccgtcgttcatc 9551807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 638883 - 638848
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  638883 gaatcttcaatctcatcatcaacaccgtcgttcatc 638848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 10473537 - 10473502
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  10473537 gaatcttcaatctcatcatcaacaccgtcgttcatc 10473502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 51836475 - 51836510
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||    
T  51836475 gaatcttcaatctcatcatcaacaccgtcgttcatc 51836510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 29826068 - 29826118
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||| |||||||||||||    
T  29826068 aatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggttt 29826118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 9551770 - 9551807
Alignment:
Q  238 cagaattttcaatctcatcatcaacaccgtcgttcatc 275  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9551770 cagaatcttcaatctcatcatcaacaccgtcgttcatc 9551807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 6385748 - 6385807
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||||| |||||| ||||||||  |||||||| ||||||||| |||||||||||||    
T  6385748 tgctgtggaaatggtttctgtgagttggactccaaaaccattttgctgtggaaatggttt 6385807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 38010573 - 38010522
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggtttt 237  Q
    |||||||| |||||||| ||||||||| ||||||||  ||||||||||||||    
T  38010573 aatggtttctgtgagttgtactccaaaaccattttgttgtggaaatggtttt 38010522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 359
Target Start/End: Complemental strand, 45256789 - 45256758
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgtt 359  Q
    ||||||||||||||||||||||||||||||||    
T  45256789 gaatcttcaatctcatcatcaacaccgtcgtt 45256758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 48077099 - 48077142
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcac 283  Q
    |||| |||||||||||||||||||| |||||||||| |||||||    
T  48077099 gaatcttcaatctcatcatcaacactgtcgttcatcatcatcac 48077142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 48077099 - 48077134
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||| ||||||||||    
T  48077099 gaatcttcaatctcatcatcaacactgtcgttcatc 48077134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 50644593 - 50644558
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||| |||||||||||||    
T  50644593 gaatcttcaatctcatcatcaataccgtcgttcatc 50644558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 6385515 - 6385561
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgt 286  Q
    |||| |||||||||||||||||||  |||||||||| ||||||||||    
T  6385515 gaatcttcaatctcatcatcaacattgtcgttcatcatcatcaccgt 6385561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 49137491 - 49137541
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggttt 236  Q
    |||||||| |||||||| ||||||||| ||||||||  |||||||||||||    
T  49137491 aatggtttatgtgagttgtactccaaaaccattttgttgtggaaatggttt 49137541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 26446801 - 26446842
Alignment:
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||||||||||||||||||| |||||||| | ||||||    
T  26446801 tcatcaccgtaccggaatgccaaaaccattttgatatggaaa 26446842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 6385733 - 6385765
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  6385733 atgccaaaaccattttgctgtggaaatggtttc 6385765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 12722878 - 12722910
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  12722878 atgccaaaaccattttgctgtggaaatggtttc 12722910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 17109859 - 17109891
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  17109859 atgccaaaaccattttgctgtggaaatggtttc 17109891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 21995774 - 21995742
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  21995774 atgccaaaaccattttgctgtggaaatggtttc 21995742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 25573595 - 25573627
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  25573595 atgccaaaaccattttgctgtggaaatggtttc 25573627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 356
Target Start/End: Complemental strand, 38245812 - 38245784
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtc 356  Q
    |||||||||||||||||||||||||||||    
T  38245812 gaatcttcaatctcatcatcaacaccgtc 38245784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 54895508 - 54895476
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  54895508 atgccaaaaccattttgctgtggaaatggtttc 54895476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 178 - 318
Target Start/End: Original strand, 2826247 - 2826388
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| | |||| |||||||| ||||||||| ||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||     
T  2826247 tgctgtggaaatagtttctgtgagttgtactccaaatccattttgctgtggaaatggtttccagaatcttcaatatcatcatcaacaccgtcgttcatca 2826346  T
Q  277 tcatcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  2826347 tcatcaccgtaccggaatgccaaaaccattttgctgtggaaa 2826388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 28069453 - 28069562
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||     
T  28069453 tgctgtggaaatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatca 28069552  T
Q  277 tcatcaccgt 286  Q
    ||||||||||    
T  28069553 tcatcaccgt 28069562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 191 - 283
Target Start/End: Complemental strand, 34329998 - 34329906
Alignment:
Q  191 tttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcgtcatcac 283  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  34329998 tttttgtgagttgtactccaaacccattttactgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatcatcatcac 34329906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 28069484 - 28069551
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28069484 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 28069551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 34329981 - 34329914
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34329981 ccaaacccattttactgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 34329914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 34330080 - 34330001
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaat 319  Q
    |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  34330080 gaatcttcaatctgatcatcaacaccgtcgttcatcatcatcaccgtaccggaatgccaaaaccattttgctgtggaaat 34330001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 2826278 - 2826345
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2826278 ccaaatccattttgctgtggaaatggtttccagaatcttcaatatcatcatcaacaccgtcgttcatc 2826345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 2826191 - 2826264
Alignment:
Q  252 tcatcatcaacaccgtcgttcatcgtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  2826191 tcatcatcaacatcgtcgttcatcatcatcaccgtaccggaatgccaaaaccattttgctgtggaaatagtttc 2826264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 8949544 - 8949493
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggtttt 237  Q
    |||||||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  8949544 aatggtttctgtgagttgtactccaaaaccattttgctgtggaaatggtttt 8949493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 33868825 - 33868780
Alignment:
Q  187 atggtttttgtgagttctactccaaacccattttgcggtggaaatg 232  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||    
T  33868825 atggtttttgtgagttgtactccaaaaccattttgctgtggaaatg 33868780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 16667845 - 16667880
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||| |||||||||||||||||||||||    
T  16667845 gaatcttcaatcgcatcatcaacaccgtcgttcatc 16667880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 16668204 - 16668255
Alignment:
Q  186 aatggtttttgtgagttctactccaaacccattttgcggtggaaatggtttt 237  Q
    |||||||| |||||||| ||||||||| ||||||||| | ||||||||||||    
T  16668204 aatggtttctgtgagttgtactccaaaaccattttgctgaggaaatggtttt 16668255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 34330080 - 34330045
Alignment:
Q  328 gaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||| ||||||||||||||||||||||    
T  34330080 gaatcttcaatctgatcatcaacaccgtcgttcatc 34330045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 16667845 - 16667887
Alignment:
Q  240 gaattttcaatctcatcatcaacaccgtcgttcatcgtcatca 282  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||    
T  16667845 gaatcttcaatcgcatcatcaacaccgtcgttcatcatcatca 16667887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 28069437 - 28069470
Alignment:
Q  292 aatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||||||| ||||||||||||||||||||||||    
T  28069437 aatgccaaaaccattttgctgtggaaatggtttc 28069470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 11376521 - 11376553
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  11376521 atgccaaaaccattttgctgtggaaatggtttc 11376553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 22671900 - 22671868
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  22671900 atgccaaaaccattttgctgtggaaatggtttc 22671868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 23155746 - 23155714
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  23155746 atgccaaaaccattttgctgtggaaatggtttc 23155714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 23334930 - 23334962
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  23334930 atgccaaaaccattttgctgtggaaatggtttc 23334962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 30783544 - 30783512
Alignment:
Q  305 ttttgctgtggaaatggtttccagaatcttcaa 337  Q
    ||||| |||||||||||||||||||||||||||    
T  30783544 ttttgttgtggaaatggtttccagaatcttcaa 30783512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 318
Target Start/End: Original strand, 24549 - 24702
Alignment:
Q  178 tgctgtggaa-tggtttttgtgagttctactccaaacccattttgcggtggaaatggttttcagaattttcaatctcatcatcaacaccgtcgttcatcg 276  Q
    |||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||     
T  24549 tgctgtggaaatggtttctgtgagttgtactccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatca 24648  T
Q  277 tca------------tcaccgtaccggaatgccaaacccattttgctgtggaaa 318  Q
    |||            ||||||||||||||||||||| |||||||||||||||||    
T  24649 tcatcacagtcatcttcaccgtaccggaatgccaaaaccattttgctgtggaaa 24702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 24580 - 24647
Alignment:
Q  296 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24580 ccaaacccattttgctgtggaaatggtttccagaatcttcaatctcatcatcaacaccgtcgttcatc 24647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 24471 - 24566
Alignment:
Q  239 agaattttcaatctcatcatcaacaccgtcgttcatc---------gtcatcaccgtaccggaatgccaaacccattttgctgtggaaatggtttc 325  Q
    ||||| |||||||||||||||||| ||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24471 agaatcttcaatctcatcatcaacgccgtcgttcatcatcaccgtcgtcatcaccgtaccggaatgccaaaaccattttgctgtggaaatggtttc 24566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 24471 - 24507
Alignment:
Q  327 agaatcttcaatctcatcatcaacaccgtcgttcatc 363  Q
    |||||||||||||||||||||||| ||||||||||||    
T  24471 agaatcttcaatctcatcatcaacgccgtcgttcatc 24507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 28489 - 28457
Alignment:
Q  293 atgccaaacccattttgctgtggaaatggtttc 325  Q
    |||||||| ||||||||||||||||||||||||    
T  28489 atgccaaaaccattttgctgtggaaatggtttc 28457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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