View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0426_low_8 (Length: 323)
Name: NF0426_low_8
Description: NF0426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0426_low_8 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 91 - 323
Target Start/End: Complemental strand, 23131804 - 23131572
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23131804 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
23131705 |
T |
|
| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23131704 |
attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta |
23131605 |
T |
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| Q |
291 |
atctgcctccagcaattgcagattacattaata |
323 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23131604 |
atctgcctccagcaattgcagattacattaata |
23131572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 91 - 323
Target Start/End: Original strand, 20285777 - 20286009
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20285777 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
20285876 |
T |
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| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20285877 |
attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta |
20285976 |
T |
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| Q |
291 |
atctgcctccagcaattgcagattacattaata |
323 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
20285977 |
atctgcctccagcaattgcatattacattaata |
20286009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 91 - 323
Target Start/End: Original strand, 11898076 - 11898308
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11898076 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
11898175 |
T |
|
| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11898176 |
attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacatatcggtcaacacactcatgctctctacacta |
11898275 |
T |
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| Q |
291 |
atctgcctccagcaattgcagattacattaata |
323 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
11898276 |
atctgcctccagcaattgcatattacattaata |
11898308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 91 - 318
Target Start/End: Complemental strand, 26431917 - 26431690
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
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||||||||||||||||||| | || ||||||| ||||||||||| ||||| || ||| |||||||||||||||| |||||||||||||| || |||||| |
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| T |
26431917 |
catcatcaaagcaaaaaatattctttgtaatggatatctatggcgtgctggctcgggttcctcctccttttggtttcataattggagcccacacggactg |
26431818 |
T |
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| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta |
290 |
Q |
| |
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||||| || ||||||||||||||||| || |||||||| ||||| |||||||| ||| || | ||||||| |||||| | || ||||||||||||| |
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| T |
26431817 |
attggttccttggttcccatcattgacatacatgatattcacctcactgttaaagaggttctctcctataacggacaacactcacaggctctctacacta |
26431718 |
T |
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| Q |
291 |
atctgcctccagcaattgcagattacat |
318 |
Q |
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||||||| || |||||||||||||||| |
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| T |
26431717 |
atctgcccccgacaattgcagattacat |
26431690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 91 - 323
Target Start/End: Complemental strand, 14652899 - 14652667
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||| |||||| |||||||| ||||||||||||||||| |||||| |
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| T |
14652899 |
catcatcaaagcaaaaaatattctccgtaatggttatctatggcgtgctggctcaggtaactcctctttttggtttcataattggagcccccacggactg |
14652800 |
T |
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| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta |
290 |
Q |
| |
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||||| |||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
14652799 |
attggttcactggttcccatcattgacatacatgatattcaactcacagttaaagatgttttcacccataacggccaacacactcatgctctctacacta |
14652700 |
T |
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| Q |
291 |
atctgcctccagcaattgcagattacattaata |
323 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
14652699 |
atctgcctccagcaattgcagattacatcaata |
14652667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 7818103 - 7818159
Alignment:
| Q |
130 |
atggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatgg |
186 |
Q |
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|
|||||||| ||||||||| |||||||||||||||| || |||||||||||||||| |
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| T |
7818103 |
atggcgcgttggttcaggatcctcctccttttggtttcacgattggagcccccatgg |
7818159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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